Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00054 ATGGCAATTTTGTCTTTCGAAAATCTACCTTTGGGAGTCAGATTTCGTCCTACCGACGGTGAGCTCGTGGATCACTACTTACGGAAGAAGATCAACGGAAGCGATTCGGAAGTGGAGGTGATTCCTGAAGTTGATGTTTGTAAGTGGGAGCCATGGGATTTGCCAAGCCTATCGCGGATTAAGTCGGATGATCTGGAGTGGTTCTTCTTTTGCCCTCGTGATCGAAAGTACCCTAATGGTAATCGTTCAAACAGGGCAACGGAAGCCGGCTACTGGAAAGCCACGGGAATGGATCGAAAGATCAAATCTCGTTCGTCTGGCAAGAAAGTGATTGGTGTGAAGAAGACACTGGTTTTCTACAGAGGGCGTGCTCCTAAGGGTGTGAGGACCAACTGGAAAATTCACGAGTATCATGCAACTGAGAAGGATCTTGACGGCACGAAAGCCGGGCAGGGTGCCTTTGTTCTCTGTCGCTTATTCAAGGAACCCGATGAGAACACTGAGAATTCGAACTGTGATGAAATTGAACCAACTGGTTCCTCTCCTGCCGCAACCATATCTTCTCCTGATGATATGCCATCAAACCAAGCATTGGTTCAAAGAACCCCAGAGTCAGAGATGCAACCCGGAGAGCAACAAGAGATCCACTCCACTAGTTATATTGCTTCTGATGTTGAAGATCGAGAAGCAGAAGTGGATCCGCAGCTGGAAGAAGAGTTGAGGAGGCACTTGGATGAGCCAACACTTGAGCCAATGAATTTCGAGGTTCTCTCCTCGGATTCCCCCCTTGCCAGCGACATCGGCTATGGCCATAACAAGATGCCATTTCAGGATGGTACTGATGAGGAGGACGTCTCTGTTACAGAATTCTTAAATACAGTTCTCAAAAGCGAGGATGAGTACTCATGTGTAGATTCAACTAGTCAGATGAACTTGGCTGTTGAGAGTGAGCCATTTGGTCCTCACATTTGTATGATGCAGTCTAGCCCATGGGGGTCTATGTTTGGCAAGGACAGTGGTTCAAGCAGTGACGCAGATACGGAAGTGTTTCAAGCGCAGGGTTATTCTGAGCTGAAGGATTCCCGATGGTTTAATGAGCCTGTGGATACCAGTGATTCTTTACAGAAGCAAATGGCTCTCGGATCTCACAGAACTGAAACCTCCCATGGTGGTGAATATGGAATGGGAAATAATGGTTTCCTTTGGGATTACTCTGTTGGACTGGATGCTTCCTCTGCTAATAATGTAGCAGACCCCTTCTGTAATTTGTTTAATAGTGTTGATGAATCAACCAATAAGCATAATCCTGTCAACAACAGTGGTGATCTTGTTGGGACCGGAATCAAGATAAGGACCCGTCAAGCACAGTATCCATCAAGTTCCCAGAACTTAGAAACCCAGGGCACTGTACAGTTTACTGCCCCAAGAAGGATCCGCTTGCAGAAGAGACTGTCCATCAAAGGAGTTTCCTTCAACGGGAGAGAATTGAGCTGCAATGCAGTAGGCCACGAGGAGAAACCAACAACTACAGAGGCTGCTGGAGAAGCTATGGAACATAATACCACCACTGATAAGCCGCAGAAGGAAACCTCCCTCCCCAGTTCTGACATTAACGAGGAAATCTCCCAAGAATTCCCCAATACAAAGCTGAGGTTCAGATCAAAGTCGAGACAGGATAGTGCAACAGGCAGTGATCGACGGGGTTCATTGTCGTTAGCAGAGGCACCTCTCGTGCGCTCCTCAAGTCTATCATCTGTTCGTATAGGATGTGTAGCATTAGTTATAATCCTGTTCATTGTGTTTATTGGGGCATGGAGAGGCCTGAAATTATGA 1833 0.4686 MAILSFENLPLGVRFRPTDGELVDHYLRKKINGSDSEVEVIPEVDVCKWEPWDLPSLSRIKSDDLEWFFFCPRDRKYPNGNRSNRATEAGYWKATGMDRKIKSRSSGKKVIGVKKTLVFYRGRAPKGVRTNWKIHEYHATEKDLDGTKAGQGAFVLCRLFKEPDENTENSNCDEIEPTGSSPAATISSPDDMPSNQALVQRTPESEMQPGEQQEIHSTSYIASDVEDREAEVDPQLEEELRRHLDEPTLEPMNFEVLSSDSPLASDIGYGHNKMPFQDGTDEEDVSVTEFLNTVLKSEDEYSCVDSTSQMNLAVESEPFGPHICMMQSSPWGSMFGKDSGSSSDADTEVFQAQGYSELKDSRWFNEPVDTSDSLQKQMALGSHRTETSHGGEYGMGNNGFLWDYSVGLDASSANNVADPFCNLFNSVDESTNKHNPVNNSGDLVGTGIKIRTRQAQYPSSSQNLETQGTVQFTAPRRIRLQKRLSIKGVSFNGRELSCNAVGHEEKPTTTEAAGEAMEHNTTTDKPQKETSLPSSDINEEISQEFPNTKLRFRSKSRQDSATGSDRRGSLSLAEAPLVRSSSLSSVRIGCVALVIILFIVFIGAWRGLKL* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00054 610 SUPERFAMILY NAC domain 4 162 IPR036093 GO:0003677|GO:0006355
Eupl08g00054 610 Gene3D NAC domain 18 167 IPR036093 GO:0003677|GO:0006355
Eupl08g00054 610 MobiDBLite consensus disorder prediction 526 540 - -
Eupl08g00054 610 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 226 - -
Eupl08g00054 610 MobiDBLite consensus disorder prediction 172 216 - -
Eupl08g00054 610 ProSiteProfiles NAC domain profile. 9 162 IPR003441 GO:0003677|GO:0006355
Eupl08g00054 610 MobiDBLite consensus disorder prediction 165 216 - -
Eupl08g00054 610 FunFam Nac domain-containing protein 86 18 165 - -
Eupl08g00054 610 Pfam No apical meristem (NAM) protein 10 138 IPR003441 GO:0003677|GO:0006355
Eupl08g00054 610 MobiDBLite consensus disorder prediction 500 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00054 Eupl-Chr8 1426449 1429649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00054 1 527 NAC Transcription Factor Family AT4G35580 41.667 1.39e-108 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl08g00054 NAM 2.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00054 - - tss:122661115 537.339