Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00053 ATGGGACGCGTGAGGACGAAGACCGTGAAGAAATCGTCTCGACAGGTGATCGAGAGGTACTACTCTCGGATGACCCTTGACTTCCACACCAACAAGAAGATATTGGAGGAGGTGGCCATCATCCCGTCCAAGCGCCTCCGCAACAAGATCGCCGGATTCTCCACCCACTTGATGAAGCGCATCCAGCGTGGTCCAGTCCGCGGCATCTCACTCAAGTTGCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTCGTCCCCGACGAGTCCGCCATTAAGACCGACTTGATCGAGGTCGACAAGGAGACCATCGACATGCTTGCCGCCCTCGGCATGTCCGATCTCCCTGGTGTGGTCAAGCAGCCCGATCCTCCCATGGGTCCCTCTGCTGCTTTTTCCAGGCCCGTCGGAGGCTTCGGCGCCAGAAGGACTTAG 432 0.5926 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQRGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETIDMLAALGMSDLPGVVKQPDPPMGPSAAFSRPVGGFGARRT* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00053 143 Pfam Ribosomal S17 1 118 IPR001210 GO:0003735|GO:0005840|GO:0006412
Eupl08g00053 143 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Eupl08g00053 143 PANTHER 40S RIBOSOMAL PROTEIN S17 1 125 IPR001210 GO:0003735|GO:0005840|GO:0006412
Eupl08g00053 143 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
Eupl08g00053 143 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Eupl08g00053 143 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
Eupl08g00053 143 MobiDBLite consensus disorder prediction 117 143 - -
Eupl08g00053 143 FunFam 40S ribosomal protein S17 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00053 Eupl-Chr8 1411770 1412990 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00053 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 82.517 7.70e-80 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00053 K02962 - msin:131248714 251.136