Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00052 ATGCAGAATGAGGGGTCGGATGCGATTGATATTGTAATTGGTGAGAAACAAGGAGTGATGGAGAATTTACCTAGGGAGAAGGGAGGAGTAGGCCAGAGTTCATTGGGGGAATGTGCTGAAATAGGTGCTCAGACAGTGCTCACCATTGTGATCTCTAGTAGAGATTCGGTTGATCAGGTTCCTCCAGCTGCGGAAACAAAGGGGAATGTGAGCTCAAATGCGGAGTCGCGTAGTTGTAATCCAGTTTCAGTGATTTCAGAACCAAAGGGGAATTTTTTGAAGACTACAGGCACCAACAAGGATGAAATAGCTGATGCTGTCGCTCCTAAGAAAGGTTCATTGTCAAGAAGTGAAAGTTCTCGTGAACAATGCAGAGTTTGTCAGCAGCAAACGGAAGAAGCTCTGATAGATCTTGGATGTCGATGTCGAGGTGGGCTTGCAAAAGCTCACCGATCATGCATAGACACTTGGTTTCGTACTAGAGGTTCAAATAAATGTGAGATATGCCAGCAGGTAGCTGCAAATGTGGCACCACCAGAATCCCTGCCAAGTACAAATTATTGGGTTTGGAGGATCGACCCAACCTTTAGAGGGGGTGTACAAGAACGTGAAAGGGGTTGCTTCAGTCCACTTTGGGTGGCTTTCTCGATCCTTATTGGTGGGCTCTTGTTAGATGTGCTTATATCCATTTCTCTTGGTGTCTCTGCGCTGCCTGTGAACATCATAATTGGTGTTCTCGTTGTGCTAGGACTCGGTACCGCACTTCGGCTTGCACTGGAATGCTGCCATGAGTGGAGTATAAGGAGAGTAGTCCAAAGGGTGGACACAAATATAACTATTGGCTACCATCCTGCAGTGTAG 861 0.4657 MQNEGSDAIDIVIGEKQGVMENLPREKGGVGQSSLGECAEIGAQTVLTIVISSRDSVDQVPPAAETKGNVSSNAESRSCNPVSVISEPKGNFLKTTGTNKDEIADAVAPKKGSLSRSESSREQCRVCQQQTEEALIDLGCRCRGGLAKAHRSCIDTWFRTRGSNKCEICQQVAANVAPPESLPSTNYWVWRIDPTFRGGVQERERGCFSPLWVAFSILIGGLLLDVLISISLGVSALPVNIIIGVLVVLGLGTALRLALECCHEWSIRRVVQRVDTNITIGYHPAV* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00052 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 178 IPR013083 -
Eupl08g00052 286 MobiDBLite consensus disorder prediction 55 81 - -
Eupl08g00052 286 ProSiteProfiles Zinc finger RING-CH-type profile. 116 176 IPR011016 GO:0008270
Eupl08g00052 286 MobiDBLite consensus disorder prediction 65 81 - -
Eupl08g00052 286 Pfam RING-variant domain 124 169 IPR011016 GO:0008270
Eupl08g00052 286 CDD RING_CH-C4HC3_MARCH 124 170 - -
Eupl08g00052 286 PANTHER ZINC FINGER, RING-CH-TYPE 51 242 - -
Eupl08g00052 286 SMART ringv_2 123 170 IPR011016 GO:0008270
Eupl08g00052 286 SUPERFAMILY RING/U-box 119 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00052 Eupl-Chr8 1398683 1407390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00052 105 182 C3H Transcription Factor Family AT2G37950 39.506 1.28e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00052 - - tss:122664054 316.235