Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00021 ATGGCTGATACCGAGGACATTCAGCCTCTCGTCTGTGACAATGGAACCGGAATGGTCAAGAAAGATGCGTATGTCGGTGATGAGGCCCAGTCCAAGAGAGGTATCCTTACATTGAAATACCCCATTGAGCATGGGATTGTGAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTTTACAATGAGCTCCGCGTGGCTCCGGAAGAACATCCCGTTCTCCTTACTGAAGCCCCTCTCAACCCCAAAGCTAACAGGGAGAAGATGACCCAGATCATGTTTGAAACTTTCAATGTCCCAGCCATGTACGTTGCCATTCAAGCCGTACTCTCCCTCTATGCCAGTGGCCGCACCACAGGTCGGTGGAATACTTGTGAATTATCATGTATTGTGCTGGATTCTGGTGATGGAGTGAGTCACACAGTCCCCATCTATGAAGGTTATGCACTCCCCCATGCCATTCTCCGGCTTGACCTCGCAGGACGGGATCTGACTGATGCGCTGATGAAGATTCTAACCGAGAGAGGTTACTCATTCACCACAACTGCCGAACGAGAAATTGTTCGTGACATGAAGGAGAAGCTTGCCTATGTGGCTCTTGACTATGAGCAGGAGCTCGAGACTGCGAAGAGCAGCTCATCAATTGAAAAGAGCTACGAGCTGCCCGACGGTCAGGTAATTACCATTGGAGCTGAGCGATTCCGTTGTCCAGAGGTGCTCTTCCAACCCTCACTCATTGGGATGGAAGCTGCTGGAATTCATGAGACTACATATAACTCGATCATGAAGTGTGATGTTGATATTAGAAAGGATTTGTATGGTAACATCGTGCTCAGTGGTGGGTCTACCATGTTTCCGGGCATTGCTGATCGTATGAGCAAGGAGATCACAGCTCTTGCCCCAAGCAGCATGAAGATCAAGGTGGTGGCACCGCCTGAGAGAAAGTACAGTGTCTGGATTGGAGGGTCTATCTTGGCCTCCTTGAGCACGTTCCAGCAGATGTGGATATCGAAGGGAGAGTACGACGAGTCTGGACCGTCAATCGTCCACAGGAAGTGCTTTTAG 1068 0.4991 MADTEDIQPLVCDNGTGMVKKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGRWNTCELSCIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00021 355 SUPERFAMILY Actin-like ATPase domain 128 355 IPR043129 -
Eupl08g00021 355 ProSitePatterns Actins and actin-related proteins signature. 75 87 IPR020902 -
Eupl08g00021 355 FunFam Actin, muscle 160 251 - -
Eupl08g00021 355 Gene3D Actin; Chain A, domain 4 160 251 - -
Eupl08g00021 355 ProSitePatterns Actins signature 1. 24 34 IPR004001 -
Eupl08g00021 355 FunFam Major actin 238 318 - -
Eupl08g00021 355 SUPERFAMILY Actin-like ATPase domain 6 121 IPR043129 -
Eupl08g00021 355 PRINTS Actin signature 32 54 IPR004000 -
Eupl08g00021 355 PRINTS Actin signature 216 232 IPR004000 -
Eupl08g00021 355 PRINTS Actin signature 86 99 IPR004000 -
Eupl08g00021 355 PRINTS Actin signature 20 31 IPR004000 -
Eupl08g00021 355 PRINTS Actin signature 111 130 IPR004000 -
Eupl08g00021 355 Gene3D - 109 318 - -
Eupl08g00021 355 Gene3D - 9 349 - -
Eupl08g00021 355 FunFam Putative actin-related protein 5 319 347 - -
Eupl08g00021 355 FunFam Actin, alpha skeletal muscle 8 121 - -
Eupl08g00021 355 ProSitePatterns Actins signature 2. 336 344 IPR004001 -
Eupl08g00021 355 PANTHER ACTIN 9 348 IPR004000 -
Eupl08g00021 355 Pfam Actin 19 355 IPR004000 -
Eupl08g00021 355 CDD NBD_sugar-kinase_HSP70_actin 10 161 - -
Eupl08g00021 355 SMART actin_3 7 355 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00021 Eupl-Chr8 1092246 1094205 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00021 1 355 Cytoskeleton Gene Families AT5G09810 87.565 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00021 K10355 - msin:131233984 670.233