Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00018 ATGGCCATGGTTATCATCATCCTCGTCTGCGCCCTCGTCTTCGCTCTGGCCGTCAACGGCGTCATCCGCATCTTCCTCCGCCACTCTCGCCGCTCCACACAGCTCTCCTCCGAAACTGACACTCCAAAACTGACTCACGCTGCTCCGGCGAGGGTGACGTCGCCTCCAACGCTGGTATTTGCGGCAGGGATGAAGCTACCAGGGGCGGAGGCGGAGTGTGCGATATGCTTGTCGGAGTTCGTGAACGGCGAAGGGGTTAAGGTATTGCCGAAGTGTAAGCATGGGTTCCACGTTAAATGCATCGAGGGGTGGTTGTCTTCCCATGCCACTTGTCCTACTTGCCGGAGCAGTTGTCTGACGACATCGCCTGAGAACAACGCTGGTCACCATGGAAATGAAGTCGACGTCGAATCTCAGAGCAGCCTTGACTTGAGAGAGTAA 441 0.5669 MAMVIIILVCALVFALAVNGVIRIFLRHSRRSTQLSSETDTPKLTHAAPARVTSPPTLVFAAGMKLPGAEAECAICLSEFVNGEGVKVLPKCKHGFHVKCIEGWLSSHATCPTCRSSCLTTSPENNAGHHGNEVDVESQSSLDLRE* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00018 146 SMART ring_2 73 114 IPR001841 -
Eupl08g00018 146 Pfam Ring finger domain 72 115 IPR001841 -
Eupl08g00018 146 CDD RING-H2_EL5-like 72 115 - -
Eupl08g00018 146 ProSiteProfiles Zinc finger RING-type profile. 73 115 IPR001841 -
Eupl08g00018 146 PANTHER RING-H2 FINGER PROTEIN ATL78 2 132 IPR044602 GO:0016567|GO:0016740
Eupl08g00018 146 SMART FANCL_C_2 69 125 - -
Eupl08g00018 146 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 119 IPR013083 -
Eupl08g00018 146 SUPERFAMILY RING/U-box 69 122 - -
Eupl08g00018 146 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00018 Eupl-Chr8 1067256 1068259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00018 2 129 C3H Transcription Factor Family AT5G47610 45.312 7.26e-36 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00018 K19040 - msin:131248744 166.007