Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00017 ATGCAGACAGAAGAGAAGATCAACACCACCAAACCTTTGCCATTCCATAAGCTCCTGATCTATGCAGACATGGTGGATTGGGCTCTGATGGCACTAGGGACCTTGGGTTCCATTGTCCATGGCATGGCTCAACCCGTCGGCTACCTTTTACTCGGCAAGGCGCTCAATGCTTACGGTAACAACATCAATGACCTAGATGCCATGGTTACAGCTCTCTACAAGAAAATTGCTATAACATGTTTATTGGTTCTAAAGCTTTGTTCACTTAGTTTGGAATATAACTCAAATCCTTTACATTTTGAATTTGCAGAGGTTGGATGCTGGATGTATGCGAGCGAACGACAGTTAGCACGTTTGAGATTGGCATTCCTCCAAGCAGTCTTGAATCAGGACATTGGGGCTTTTGATACCGATCTAACTAGCGGGAAGATCATCGCTGGAATAACTAACCACATGAGTATCATACAAGATGCCATTGGTGAGAAGTTGGGCCATTTTCTGTCAAATTTAGCTACTTTCTTTGTGGGAGTCTTGATTGCTTTCATCTGCTGCTGGGAAGTTGCATCGCTTACCTTGTTGGTGGTTCCTTTGATTTTTGCAATCGGCGCTACATACACCACTAAGATGAATGCCATCTCAGCAACGAGGATGGTTTATCTATCAGATGCCACATCTATGGTGGAACAGACAATATCTCAGATCAAAACTGTATTTGCATTTGTTGGAGAGAGTTCTGCAATGAAGTCCTTCTCAGAGTGCATGGAAAAACAATTCAAGCTAAGCAAGAGAGAGGCATTGATAAAGGGAGTTGGAACGGGTACGTTCCAAACCGTGACATTCTGTTCTTGGGCTTTGATCGTATGGGTTGGAGCCGTTGTTGTAGCGGCCAAGAGATCGAGCGGAGGGGACACCATAGCTGCAGTGATGAGCATTCTCTTTGGGGCTATAAAGACTAATAAGAACAACCTTGCAGGTGAGATTTTCATTGACAACCACAACATCAAGAATCTTGATCTGAAGTTCCTTAGGAGAAACGTAGGAGCAGTTTCCCAAGAACCATCACTCTTCATTGGAACCATTAAGGATAATTTAAAGGTTGGAAACATGTGTGCGAATGACGAACAGATCGAGGAAGCAGCATTGACGGCGAACGCGCACTCCTTCATCTCACAACTTCCAAATCAATATTCAACAGAGAATCTCTCCCTAGGACCTGACTCAAGTGACAGGGATACGGTTCCCACTGAAGAATCCATGAATATTAGTCACAAGATTTCAACCCAAGACTTCGAGCAACCTGAGGAATCGAAAGAAGTCAGCAAGCATTTAAGAGATCCTCCCAAGCAAGACATACAGAAAAATAGGACAACAGTTCCGTTCTTCCGAATTTGGTTTGGCTTGAACAAAATTGAGCTTGGAAAGGCTGTAATTGGCTCTCTTGCAGCAGCATTTTCCGGCATCTCGAAGCCCTTCTTTGGATTCTTCATCATAACAATAGGAGAAGCATATTATGGGCCAGATGCAAAGAGGCAAGTGGGATGGTATTCATTAACATTTTGTCTAGTAGGATTGCTTTCATTAGTCAGTCACACCTTGCAGCACTACTTCTATGGAGTGGTTGGAGAGAGAGCCATGGCTAACCTTAGAGGGGTACTGTATTCAGCTGTACTAAGTAATGAGATAGCTTGGTTTGAGAAACCTGAGAATAGCGTCGGTGGACTTACCTCACGGATCATCAATGATACATCCATGATCAAAACCATAATCTCTGATCGTATGTCTGTCATTGTCCAATGCATCTCCTCCATATTAATTGCAACCATTGTTAGCATGATTGTTAACTGGAGAATGGCCCTGGTAGCTTGGGCTGTCATGCCTTGCCACTTCATTGGTGGCCTGATTCAAGCCAAGTCAGCTAAAGGATTTTCGGGTGACTTTGCTGCTGCTCATCAAGAACTTGTCTCTCTTGCTTCTGAATCCGCAACCAATATAAAAACCATTGCCTCATTTGCCCATGAAGAGTACATACTTGAGAAAGCCAAGCTTTCTCTAGAAAAACCGATGAGGAAGAGCAGGATAGAAAGTGTTAAGTATGGGATGATTCAAGGACTGTCTCTTTGCTTATGGAACATCGCCCATGCTGTTGCCTTGTGGTACACAACAATTTTGGTTCATAGGAAACAAGCCACCTTTAAGGATAGTATAAGATCATATCAAATTTTCTCACTCACAGTACCTTCGATTACAGAGCTATGGACACTGATCCCCACTGTCATCTCCGCCATCAGTGTACTAACGCCTGCATTCCAGACTCTTGATCGAAAAACCGAAATTGAGCCAGATACACCAGAGAATTCAAATCCAAAGAGGATCAAAGGCAGAATTGAATTTGAAAAGATTATAGTTAGGCCTGGCACAGAAACAAAGGCCGATGGTAACTCATAG 2445 0.4335 MQTEEKINTTKPLPFHKLLIYADMVDWALMALGTLGSIVHGMAQPVGYLLLGKALNAYGNNINDLDAMVTALYKKIAITCLLVLKLCSLSLEYNSNPLHFEFAEVGCWMYASERQLARLRLAFLQAVLNQDIGAFDTDLTSGKIIAGITNHMSIIQDAIGEKLGHFLSNLATFFVGVLIAFICCWEVASLTLLVVPLIFAIGATYTTKMNAISATRMVYLSDATSMVEQTISQIKTVFAFVGESSAMKSFSECMEKQFKLSKREALIKGVGTGTFQTVTFCSWALIVWVGAVVVAAKRSSGGDTIAAVMSILFGAIKTNKNNLAGEIFIDNHNIKNLDLKFLRRNVGAVSQEPSLFIGTIKDNLKVGNMCANDEQIEEAALTANAHSFISQLPNQYSTENLSLGPDSSDRDTVPTEESMNISHKISTQDFEQPEESKEVSKHLRDPPKQDIQKNRTTVPFFRIWFGLNKIELGKAVIGSLAAAFSGISKPFFGFFIITIGEAYYGPDAKRQVGWYSLTFCLVGLLSLVSHTLQHYFYGVVGERAMANLRGVLYSAVLSNEIAWFEKPENSVGGLTSRIINDTSMIKTIISDRMSVIVQCISSILIATIVSMIVNWRMALVAWAVMPCHFIGGLIQAKSAKGFSGDFAAAHQELVSLASESATNIKTIASFAHEEYILEKAKLSLEKPMRKSRIESVKYGMIQGLSLCLWNIAHAVALWYTTILVHRKQATFKDSIRSYQIFSLTVPSITELWTLIPTVISAISVLTPAFQTLDRKTEIEPDTPENSNPKRIKGRIEFEKIIVRPGTETKADGNS* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00017 814 SUPERFAMILY ABC transporter transmembrane region 17 313 IPR036640 GO:0005524|GO:0016020
Eupl08g00017 814 Pfam ABC transporter 310 404 IPR003439 GO:0005524
Eupl08g00017 814 Gene3D ABC transporter type 1, transmembrane domain 436 783 IPR036640 GO:0005524|GO:0016020
Eupl08g00017 814 Gene3D ABC transporter type 1, transmembrane domain 17 318 IPR036640 GO:0005524|GO:0016020
Eupl08g00017 814 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 476 760 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl08g00017 814 MobiDBLite consensus disorder prediction 399 449 - -
Eupl08g00017 814 MobiDBLite consensus disorder prediction 428 449 - -
Eupl08g00017 814 SUPERFAMILY ABC transporter transmembrane region 465 780 IPR036640 GO:0005524|GO:0016020
Eupl08g00017 814 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 31 315 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl08g00017 814 PANTHER ABC TRANSPORTER B FAMILY 324 398 IPR039421 -
Eupl08g00017 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 399 IPR027417 -
Eupl08g00017 814 Gene3D - 323 398 IPR027417 -
Eupl08g00017 814 CDD ABC_6TM_Pgp_ABCB1_D2_like 465 778 - -
Eupl08g00017 814 CDD ABC_6TM_Pgp_ABCB1_D1_like 30 315 - -
Eupl08g00017 814 Pfam ABC transporter transmembrane region 31 315 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl08g00017 814 Pfam ABC transporter transmembrane region 477 741 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00017 Eupl-Chr8 1055081 1060749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00017 467 800 Calmodulin-binding Proteins AT2G36910 34.593 8.16e-53 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00017 K05658 - qsa:O6P43_014878 583.948