Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01779 ATGCTCGCCAAAGCCCCTCTGAACGTCCCCGAATACATCAAATTTGGCGGAAAATATTCCCAAAGTTCTCATATTTTCAACATTTTCTGCTCGAGATCAGTCGGGCATGGACATGGTCGCTGTATCTGCCATTTCGGTGGGAGTGGTAAAACTAAATGGCCGAAAACTAGGGTTTTGGTGAGGGCTGGATACACTCGTAAGCCCATGGAAACTGCAGGTGCTTATCAGTTAATCGACGACGAGACTGGAGAGAAGGTTATCGTCTGGGGAGGCATTGATGATGATTCGCCCATTCCTTCCAAGGAAGTTCTCTCCTGGAAGCCGACGGGCAGAGGTAGATCCAGTGGACAAGAGAACAAGAAGAAGACGAGAAGCGAGAGCAATGGGGGAGATGTCGAGCCTGCTGCAGCCATTGCCAACAGTGATGACTCCACAGCATGTCGGAGGGACTTAGGTAGAAGTTTTGGTAGATTAAGGGCACAGAGAGTAAGAGCTCTGATTAGCAAAGTTTCCCGTATTAAGCACGACAAGGCTGAAGATGATTATGGGAAATCAGTCCTCAAAGGTACACCTTTCGATGGATCTGATTCAGAACTTGAAATTGTGGCCCCAAAGACGAATATTGGTGCACCTAGACATAAAGGAAGCATTTCGAGAGCTTCCCGATCACAAGAAGTTAAAGATACAATGCGAGATTCTGAGACAATACCGAGCACAAGCCATTTTGACGTAATTCCTGGACTTGATTTTAAGAAGGTTTTGAGAGATAAGTCACCAATACCTCATGAGCATGAATTTGAAGTTGCCAAACCAGATGTTTCAGTTCCAAGAGCTGCTGCTTCTTCGTTAAGAGGATGGGGTGGTGGTGAGCCGAAACAGAACACTACTTTTGATTCGACAAACTTCTTAAAGCAACGCCAGAAAATGTCCATTGACAGTGGGTTTTTTAGCCGGAAATCTTTCAGAGATCTAGGTTGCAGTGATGATGTGATTGAATCTCTAAGGGGTCAGCTTTTCATTCGACCTTCGCATATTCAGGCCAAGGCATTTGCACCTGTAATTGAGGGAAAAAGTTGCATTATATCTGATCAAAGCGGGTCCGGAAAGACATTAGCGTATCTTGCACCATTGATACAGCGTCTTAGGCAAGAAGAGCTCCAAGGACTTAGTAAATCCTCATCAAGGAGTCCTCAAATAGTAATATTGGTACCGACTGCTGAGTTGGCTTCTCAGGTGTTAGGTAATTGTAGATCCATGTCAAAATTTGGGGTCCCATTCCGGTCCATGGTCGCAACAGGTGGTTTTCGACAAAGAACTCAGTTGGAAAATCTTCAGCAAGATTTAGATGTTCTTATAGCCACACCTGGTCGTTTTATTTTTCTACTTAAAGAAGGCTTCTTGCAGCTAACAAACCTTAAATGTGCTGTGTTAGATGAGGTAGATATACTTTTTGGCGACAAAGACTTTGAACAAGTGTTCCAAAGCTTAGTTAATTCTGCACCTGTTACCACACAATATCTCTTTGTGACCGCAACTTTGCCAGTGGACATGTACAACAAGCTAGTTGAAGTTTTTCCTGACTGTGAAATGATCATGGGACCTGGCATGCACCGTACGAGCTCTGGCCTTGAAGAGGTTCTTGTAGACTGCAGTGGTGATAATGGAATGGAGAAAACTCCTGAAACGGCATTCCTCAATAAGAAATCTGCTCTATTGCGGCTTGCAGAGGAAAGTCCAGTTTCCAAAACTATTGTTTTCTGCAACAAGATCGAAACTTGCAGAAAAGTTGAGAATGTATTAAAACGCTTCGACAGGAAAGGACTTAGTATCCAGGTTTTGCCATTTCATGCCGCTTTGGCACAAGAATCACGTCTAGCAAATATGAAGGATTTTCTCAATTCTCGGTCTGAAGAAGACTCTCTGTTTCTAATTTGCACTGATAGAGCTTCACGCGGAATTGACTTTGCGGGTGTAGATCATGTGGTACTCTTCGACTTCCCTCGGGATCCGAGCGAGTATGTCCGCCGTGTTGGAAGAACTGCTAGGGGTGCTGGAGGCAAGGGGAAGGCATTTGTGTTCGTAGTCGGTAAGCAGGTTTCGCTGGCACGAAGGATAATGGAAAGAAACCAAAAAGGGCACCCAGTACATGATGTGCCATCTGCTTATGATTTTGTGAGATAG 2181 0.4457 MLAKAPLNVPEYIKFGGKYSQSSHIFNIFCSRSVGHGHGRCICHFGGSGKTKWPKTRVLVRAGYTRKPMETAGAYQLIDDETGEKVIVWGGIDDDSPIPSKEVLSWKPTGRGRSSGQENKKKTRSESNGGDVEPAAAIANSDDSTACRRDLGRSFGRLRAQRVRALISKVSRIKHDKAEDDYGKSVLKGTPFDGSDSELEIVAPKTNIGAPRHKGSISRASRSQEVKDTMRDSETIPSTSHFDVIPGLDFKKVLRDKSPIPHEHEFEVAKPDVSVPRAAASSLRGWGGGEPKQNTTFDSTNFLKQRQKMSIDSGFFSRKSFRDLGCSDDVIESLRGQLFIRPSHIQAKAFAPVIEGKSCIISDQSGSGKTLAYLAPLIQRLRQEELQGLSKSSSRSPQIVILVPTAELASQVLGNCRSMSKFGVPFRSMVATGGFRQRTQLENLQQDLDVLIATPGRFIFLLKEGFLQLTNLKCAVLDEVDILFGDKDFEQVFQSLVNSAPVTTQYLFVTATLPVDMYNKLVEVFPDCEMIMGPGMHRTSSGLEEVLVDCSGDNGMEKTPETAFLNKKSALLRLAEESPVSKTIVFCNKIETCRKVENVLKRFDRKGLSIQVLPFHAALAQESRLANMKDFLNSRSEEDSLFLICTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGKGKAFVFVVGKQVSLARRIMERNQKGHPVHDVPSAYDFVR* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01779 726 MobiDBLite consensus disorder prediction 114 128 - -
Eupl07g01779 726 Gene3D - 554 717 IPR027417 -
Eupl07g01779 726 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 350 531 IPR014001 -
Eupl07g01779 726 MobiDBLite consensus disorder prediction 99 146 - -
Eupl07g01779 726 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 566 726 IPR001650 -
Eupl07g01779 726 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 319 347 IPR014014 GO:0003724
Eupl07g01779 726 MobiDBLite consensus disorder prediction 208 233 - -
Eupl07g01779 726 CDD DEADc 330 514 - -
Eupl07g01779 726 Gene3D - 290 531 IPR027417 -
Eupl07g01779 726 Pfam Helicase conserved C-terminal domain 567 683 IPR001650 -
Eupl07g01779 726 SMART ultradead3 338 546 IPR014001 -
Eupl07g01779 726 MobiDBLite consensus disorder prediction 218 233 - -
Eupl07g01779 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 695 IPR027417 -
Eupl07g01779 726 CDD SF2_C_DEAD 567 694 - -
Eupl07g01779 726 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 234 723 - -
Eupl07g01779 726 SMART helicmild6 594 684 IPR001650 -
Eupl07g01779 726 Pfam DEAD/DEAH box helicase 344 519 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01779 Eupl-Chr7 39870696 39884764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01779 320 705 Eukaryotic Initiation Factors Gene Family AT3G19760 27.720 3.40e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01779 K13179 - nnu:104590011 908.286