Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01778 ATGGAGAGTTTCGCTAAATTTAGTTGTGTTCTGATATTTCTGGCGGTGTTCGCCTCTAAATTTGGAGGAGCTCTGGCTATTTGGCAGCGAGCCCATGCAACGTTCTACGGAGGAAGTGATGCTTCAGGAACAATGGGGGGTGCATGTGGTTATGGGAATCTAAACACCGACGGGTACGGTATCAAAACTGCGGCCTTGAGCACGGCTCTCTTCAACAATGGCAAGTCATGCGGGGCTTGTTATCAGATCATTTGTGACTCAACTAAGGTGCCCCAATGGTGCTTAAAGGGCACATATATCACAATAACGGCTACAAATTTCTGTCCACCAAACAACAATCTCCCGAGCGACAATGGAGGGTGGTGCAACCCACCACGCGAGCACTTCGACATGTCACAACCTGCATTCGAGAAGATTGCAGTTTATAGGGCAGGGATTGTACCTGTGCTCTATAGAAGGGTTGGGTGCAAGAGAAGTGGAGGCATCAGATTTACGATCAACGGACGAGATTACTTCGAGCTGGTGCTGATTAGTAATGTAGGGGGAGCTGGGGAGATATCAAAAGTGTGGATCAAAGGGTCGAAAACAAAATGGGAAGCCATGTCAAGGAACTGGGGATCAAACTGGCAGAGCCTATCATATCTGAACGGCCAGAGCTTATCGTTTAAAATACAGACAAGCAATGGAAGGAGCCGTACAGCCGATAACGTTGCACCTTCCAATTGGAGGTTCGGTCAGACCTTCTCCAGCAACGTTCAATTCTAA 765 0.4797 MESFAKFSCVLIFLAVFASKFGGALAIWQRAHATFYGGSDASGTMGGACGYGNLNTDGYGIKTAALSTALFNNGKSCGACYQIICDSTKVPQWCLKGTYITITATNFCPPNNNLPSDNGGWCNPPREHFDMSQPAFEKIAVYRAGIVPVLYRRVGCKRSGGIRFTINGRDYFELVLISNVGGAGEISKVWIKGSKTKWEAMSRNWGSNWQSLSYLNGQSLSFKIQTSNGRSRTADNVAPSNWRFGQTFSSNVQF* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01778 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 161 IPR007112 -
Eupl07g01778 254 Pfam Lytic transglycolase 63 151 IPR009009 -
Eupl07g01778 254 FunFam Expansin 161 254 - -
Eupl07g01778 254 SUPERFAMILY PHL pollen allergen 158 250 IPR036749 -
Eupl07g01778 254 Gene3D - 18 157 IPR036908 -
Eupl07g01778 254 Pfam Expansin C-terminal domain 162 239 IPR007117 -
Eupl07g01778 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
Eupl07g01778 254 Gene3D - 161 254 IPR036749 -
Eupl07g01778 254 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Eupl07g01778 254 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Eupl07g01778 254 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Eupl07g01778 254 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Eupl07g01778 254 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Eupl07g01778 254 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Eupl07g01778 254 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Eupl07g01778 254 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Eupl07g01778 254 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Eupl07g01778 254 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Eupl07g01778 254 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Eupl07g01778 254 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Eupl07g01778 254 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Eupl07g01778 254 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Eupl07g01778 254 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Eupl07g01778 254 FunFam Expansin 18 157 - -
Eupl07g01778 254 PANTHER EXPANSIN-A15 11 251 IPR002963 GO:0009664
Eupl07g01778 254 SMART dpbb_1 63 151 IPR007112 -
Eupl07g01778 254 SUPERFAMILY Barwin-like endoglucanases 13 179 IPR036908 -
Eupl07g01778 254 CDD DPBB_EXPA_N 28 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01778 Eupl-Chr7 39862831 39863991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01778 1 254 Expansin Gene Family AT4G01630 72.549 1.83e-137 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01778 - - nnu:104590611 449.514