Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01775 ATGTCTTCTTCGAGACCTACCGAATCTTTGAGCAACACAAACCGATCAAGACACAGTGCTAGGATTATTGCTCAGACATCAGTAGATGCTAAGCTCCACGCTGAGTTTGAGGAGTCGGGTAGTTCCTTTGATTACTCAAGGTCAGTACATGTAACCAACACAGTCTCCAGCAACCAACAACCTAGGCCTGATAAAGTAACTACAGCTTACCTCCATCACATACAGAAAGGCAAGCTAATCCAGCCATTTGGTTGCTTGCTAGCCCTAGATGAGAAAACTTTTAAGGTCGTTGCCTACAGTGAGAATGCCCCTGAGATGCTAACCATGGTTAGCCATGCAGTACCCAGCGTTGGAGAACACCCGTTTCTTGGTGTTGGCACTGATATAAGGACTATATTCACTTCTCCAAGTGCCTCTGCATTGCAAAAGGCCTTGGGGTTTGGGGATGTGTCTCTGTTGAATCCTATCTTAGTCCATTGTAAAACTTCCGGGAAGCCCTTCTATGCAATTGTGCACAGGGTTACTGGTAGTTTAATCATCGACTTTGAACCTGTGAAGCCTTACGAAGTACCCATGACTGCTGCTGGGGCCCTCCAGTCCTACAAGCTTGCAGCCAAGGCTATTGCGCGGTTGCAGTCATTGCCCAGTGGGAGCATGGATAGGCTGTGCGATACGGTGGTCCAAGAGGTTTATGAACTCACGGGTTATGACAGGGTAATGGCTTATAAGTTTCACGAGGATGATCACGGGGAAGTTGTGTCTGAGATCACAAAGCCAGGCCTGGAACCTTATCTGGGTCTGCATTATCCAGCCACGGACATCCCTCAGGCCGCTCGTTTCCTGTTCATGAAGAATAAGGTCCGTATGATCTGTGATTGCCGTGCGAAGCATGTGAAGGTCCTCCAAGATGAGAAGCTGCCTTTCGATCTCACCTTGTGTGGTTCGACCCTGAGGGCCCCGCACAGTTGCCACTTACAGTATATGGAGAACATGGAGTCCATTGCCTCTCTGGTTATGGCTGTGGTTATCAATGAAGATGACGAGGAAGGTGAAAGCTCTGGTTCTGCACAACCACAGAAGAGGAAGAGGCTATGGGGGCTTGTTGTCTGCCATAACACAACTCCGAGGTTTGTTCCTTTCCCTCTTCGGTATGCCTGTGAGTTTCTAATCCAAGTCTTCGCCATCCATGTCAATAAGGAGTTTGAATTAGAAAACCAGATCCTTGAAAAGAACATTCTACGTACCCAAACACTATTGTGTGATATGCTGATGCGAGATGCACCTCTAGGTATTGTTTCGCAGAGCCCCAATATCATGGATCTTGTAAAATGCGATGGGGCTGCCCTTTTATACAAAAATAAGATCTGGCGGTTTGGGTCGACTCCCAGCGAATTCCAGATATGTGACATAGCCTCATGGCTATCCGAGTATCACATGGATTCCACTGGTTTGAGTACAGATAGCCTGTATGATGCAGGCTTTCCGGGGTCTCTCTCTCTCGGTGACACTGTATGTGGGATGGCGGCTGTGAGAATAACTTCCAAGGACATGCTTTTCTGGTTCCGATCCCACACCGCCGGTGAGGTTCGATGGGGTGGTGCAAAGCATGATCCAGGTGACAAGGATGATGGGAAGAAGATGCACCCAAGATCTTCATTTAAGGCATTCCTTGAAGTAGTTAAGACAAGGAGTTTACCTTGGAAGGACTATGAGATGGATGCAATCCACTCTTTGCAGCTTATCCTTAGGAATGCTTTCAAAGATGTTGAAACTGCTGATCTTAACACCACTGTGATCCACTCACAACTCAACAACCTCAAGATTGAAGGGTTGGAGGAATTGGAAGCAGTGACAAATGAGATGGTCCGTCTGATCGAGACAGCCACGGTTCCAATCTTGGCAGTTGATGTTAATGGGCTCGTTAATGGGTGGAATACAAAAATTGCAGAGTTAACTGGTATGCCCGTCGATCAAGTAATTGGGAAGCATTTGCTCACACTTGTGGAAGATTCTTCAGCTAATGCAGTCGAGAAGATGCTGTACCTGGCAGTGCAGGGAAAAGAGGAGCAAAATGTCCAATTTGAGATGAAAACTCATGGTTCTCGTAAAGACAGTGGTCCTGTTAGCTTAGTTGTGAATGCTTGTGCAAGCAGGGACCTTCGAGAAAATGTTGTGGGGGTGTGTTTTGTGGCCCAAGACATGACTGGTCAGAAGACAGTCATGGACAAGTTCACTCGAATCGAAGGAGATTACAAAGCAATCATACAAAACCCGAGCCCACTTATACCCCCAATATTTGGCACGGACGAATTTGGCTGGTGTTCTGAATGGAATCCAGCGATGACCAAGTTGTCTGGTTGGGAGCGGGACAAAGTGATTCATAAGATGCTATTAGGTGAGGTTTTTGGGACACACATGGCATGCTGTCGTCTCAAGAACCAAGAAGCTTTTGTTAATCTTGGAATAGTACTCAATAATGCAATGATGGGTGAGGAAACTGAGAAGGTTTCGTTTGGGTTTTTTGGGCGGAATGGGAAGTACATGGATTGCCTGCTCTCTGTGAGCAAGAAAGTGGATGTAGAGGGTACAGTCACTGGAGTCTTTTGCTTCTTGCAGATTGCCAGTCAAGAACTGCAACAGGCACTTCATGTACAACGGCTTTCGGAGCAAACTGCATTGAAGAGATTGAAGGCATTGGCTTATGTAAAACGGCAGATCAGGAATCCTCTCTCTGGAATAATATTTTCCAGGAAGATGATGGAGGAGACTGACTTGGGCGACGAGCAGCAGCAGCTTCTACATACCAGTGCGCAGTGCCAACGCCAGCTGAACAAGATTCTTGATGACACAGATCTTGAGAGCGTCATGGACGGTTATTTGGATCTGGAAATGGTTCAGTTTACTCTGCAAGAAGTGTTGGTTACTTCCACAAGTCAAGTAATGATTAAGAGCAATGGGAAGGGTATTCGAATTATTTATGATTCATCAGAGGAGATCATGACTGAAAGTCTCTATGGAGACAGTCTGAGGCTTCAACAGATCCTGGCTGATTTCTTGTTGATTTCCGTGAACTTTACTCCAACTGGAGGCCAGGTTGGAATTACTGCCACTTCGACCAAAGATCGGTTGGGAGAATGCGTTCAGCTTGCTCGTCTTGAGCTCAGGATAACGCATTCAGGTGGTGGGGTACCGGAAGAGTTGCTGAGCCAGATGTTTGAAAACAACAGTGACTCGTCTGAGGAGGGTGTCAGCTTGCATGTATGCAGGAAACTGTTGAGGCTCATGAATGGGGATGTGCAGTATCTCAGGGAAGCAGGCAAGTCGTCTTTCATCGTATCGGTTGAACTTGCCTCGGTCCCCACGTCCCGGGGCTCAAGCAGTTCCCGAGAAGAATAG 3396 0.4706 MSSSRPTESLSNTNRSRHSARIIAQTSVDAKLHAEFEESGSSFDYSRSVHVTNTVSSNQQPRPDKVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVVAYSENAPEMLTMVSHAVPSVGEHPFLGVGTDIRTIFTSPSASALQKALGFGDVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAIARLQSLPSGSMDRLCDTVVQEVYELTGYDRVMAYKFHEDDHGEVVSEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMESIASLVMAVVINEDDEEGESSGSAQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLIQVFAIHVNKEFELENQILEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKIWRFGSTPSEFQICDIASWLSEYHMDSTGLSTDSLYDAGFPGSLSLGDTVCGMAAVRITSKDMLFWFRSHTAGEVRWGGAKHDPGDKDDGKKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVETADLNTTVIHSQLNNLKIEGLEELEAVTNEMVRLIETATVPILAVDVNGLVNGWNTKIAELTGMPVDQVIGKHLLTLVEDSSANAVEKMLYLAVQGKEEQNVQFEMKTHGSRKDSGPVSLVVNACASRDLRENVVGVCFVAQDMTGQKTVMDKFTRIEGDYKAIIQNPSPLIPPIFGTDEFGWCSEWNPAMTKLSGWERDKVIHKMLLGEVFGTHMACCRLKNQEAFVNLGIVLNNAMMGEETEKVSFGFFGRNGKYMDCLLSVSKKVDVEGTVTGVFCFLQIASQELQQALHVQRLSEQTALKRLKALAYVKRQIRNPLSGIIFSRKMMEETDLGDEQQQLLHTSAQCQRQLNKILDDTDLESVMDGYLDLEMVQFTLQEVLVTSTSQVMIKSNGKGIRIIYDSSEEIMTESLYGDSLRLQQILADFLLISVNFTPTGGQVGITATSTKDRLGECVQLARLELRITHSGGGVPEELLSQMFENNSDSSEEGVSLHVCRKLLRLMNGDVQYLREAGKSSFIVSVELASVPTSRGSSSSREE* 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01775 1131 SMART pas_2 619 685 IPR000014 -
Eupl07g01775 1131 SMART pas_2 749 818 IPR000014 -
Eupl07g01775 1131 SUPERFAMILY GAF domain-like 409 587 - -
Eupl07g01775 1131 ProSiteProfiles PAS repeat profile. 747 802 IPR000014 -
Eupl07g01775 1131 CDD PAS 761 872 IPR000014 -
Eupl07g01775 1131 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Eupl07g01775 1131 Gene3D - 199 562 IPR029016 -
Eupl07g01775 1131 PANTHER OS08G0260000 PROTEIN 67 955 - -
Eupl07g01775 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 730 IPR035965 -
Eupl07g01775 1131 CDD HisKA 899 949 IPR003661 GO:0000155|GO:0007165
Eupl07g01775 1131 Gene3D PAS domain 74 321 - -
Eupl07g01775 1131 CDD HATPase_Phy-like 1005 1116 IPR044767 -
Eupl07g01775 1131 Pfam Phytochrome region 414 587 IPR013515 GO:0006355|GO:0009584
Eupl07g01775 1131 NCBIfam PAS domain S-box protein 624 739 IPR000014 -
Eupl07g01775 1131 FunFam Phytochrome 613 744 - -
Eupl07g01775 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
Eupl07g01775 1131 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1006 1116 IPR003594 -
Eupl07g01775 1131 ProSiteProfiles PAS repeat profile. 617 687 IPR000014 -
Eupl07g01775 1131 SMART HKATPase_4 1006 1118 IPR003594 -
Eupl07g01775 1131 Gene3D - 934 1112 IPR036890 -
Eupl07g01775 1131 Gene3D PAS domain 616 739 - -
Eupl07g01775 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 870 IPR035965 -
Eupl07g01775 1131 Gene3D PAS domain 763 881 - -
Eupl07g01775 1131 PIRSF Phytochrome_conventional 1 1125 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Eupl07g01775 1131 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 391 IPR016132 -
Eupl07g01775 1131 MobiDBLite consensus disorder prediction 1 21 - -
Eupl07g01775 1131 Pfam PAS fold 69 185 IPR013654 GO:0006355
Eupl07g01775 1131 Gene3D - 406 579 IPR043150 -
Eupl07g01775 1131 SUPERFAMILY GAF domain-like 198 398 - -
Eupl07g01775 1131 ProSiteProfiles Histidine kinase domain profile. 901 1118 IPR005467 -
Eupl07g01775 1131 SMART gaf_1 218 411 IPR003018 GO:0005515
Eupl07g01775 1131 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 955 1111 IPR036890 -
Eupl07g01775 1131 FunFam Phytochrome 406 537 - -
Eupl07g01775 1131 CDD PAS 628 734 IPR000014 -
Eupl07g01775 1131 Pfam His Kinase A (phospho-acceptor) domain 897 953 IPR003661 GO:0000155|GO:0007165
Eupl07g01775 1131 SMART HisKA_10 894 958 IPR003661 GO:0000155|GO:0007165
Eupl07g01775 1131 Pfam GAF domain 219 400 IPR003018 GO:0005515
Eupl07g01775 1131 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355|GO:0009584
Eupl07g01775 1131 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Eupl07g01775 1131 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355|GO:0009584
Eupl07g01775 1131 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Eupl07g01775 1131 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355|GO:0009584
Eupl07g01775 1131 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355|GO:0009584
Eupl07g01775 1131 PRINTS Phytochrome signature 431 451 IPR001294 GO:0006355|GO:0009584
Eupl07g01775 1131 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355|GO:0009584
Eupl07g01775 1131 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Eupl07g01775 1131 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Eupl07g01775 1131 Pfam PAS fold 620 734 IPR013767 GO:0006355
Eupl07g01775 1131 Pfam PAS fold 750 872 IPR013767 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01775 Eupl-Chr7 39840853 39847414 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01775 1 1118 Histidine Kinase Gene Family AT1G09570 80.161 0.0 1907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01775 K12120 - nnu:104590811 1949.87