Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01745 ATGCCTTACTCTGAACATCATCAGATGGCAAAAGGGAAACTTGAATCAACCCAAACAAAGAAGACTAATTGTTCGACAGATCTAGCATTCGTGCCTGATAATGAATTCGTTGAGCTAGTATGGGAAAATGGGCAGATTTTGATGCAAGGTCAGTCTAGTAGAACTCGAAAGAGCCCATCATGTACTGGTTTTCCGTCTCACACTTCCAAGGCTCAAGAGAAAGATGGAGGAGACGCTGTTACTCCAAATATTGGAAGGTTTGGGACTATGGACTCTGTTTTGAATGATTTCTCCTCGTTGGGGACTATCGGGCGCATAGGATTGGATCAAGACGATGATATAGTACGTTGGCTGAATTATCCCCTTGACGATTCTTTGCAACATGATTACTGTTCGGAATTCTTCTCTGAATTATCTGGGGTTAATTTGAATGCACTCTCAGAGCAGAATAATCCTGTACCCATTGATAAAAACAGTAGTTATGGTCAAATAGTTAGTGATTCCCATATGGTTTCCATGCATAGGGGTGCAAATCCAGAACAAGGGAATGCGTCTAAGATTGTCAGGGTAGGTCCTGAGCCTACAAGACCTAGAAGTAACCAGCTATGTTCGTCACCGTTACAGCAATCTCATAGATCAAGGATTTCTGATATCACTAGCAGTAACAGCAATAATGCTCACCAAGCTCCTTATGGGAATTCATGTCAGAACCTGAATTCAACCGGTGGCCCTCCTAACACAAAGATGCAGAAGCAAGATCCTAGACCCACCAGGCCACCACTGCAGCCTAGTAACAACACAGGTTTGATGAACTTCTCCCATTTCTTGCGACCTGCTGCACTTGTTAAGGCCAATCTTCGGAGCACAGATGCCACAGCTGGTCTGGCTATACCGAGCATAGATAGGTTTAGAAGTAATGACAAGGTGTCTGCCGCCAGTATTAGCAAGCCTGGTGAATCCATGATGGTCGAGTCAGCTAGTGGTTCGATAAGTGTCACAGGTTATCAGAGCCAATCAATTTCTATGCCAGGCAAGGTGGATGTAAAACCATCCATGGGTAAGCCTCTCAAGGAGCCACTCTCTGCTGAGAAGTCCGAAGCTATTTGCCAAGAAGATGCTTTTCATGATAATAAATCTCCAGATCAAGTTCTTGGCCGAACCTCAAGCTTCACAGCAAGTACGGCCATAGCAAGGCCAACTAATGAAAAGGCTACAAAGCCAGTGGTTGCATCTTCTTCCATATGCTCGGGCAGCAGTGCTGGGGGAGCTTCAAATAATCCCAAACATGTTTTGAAGAGGAAATCTCAGGATGCTGAGGAGTCCGAGTACCCGAGTGAAGATGTTGAAGAAGAATCCGTGGGTGTAATGAAATCAGCTACTTCTCGACGAGGCACGGGTCCCAAGAGAAGCCGGGCTGCAGAAGTGCATAATTTATCTGAAAGGAGGCGAAGGGATAGGATCAATGAGAAGATGCGAGCGTTACAAGAACTCATACCAAACTGCAATAAGGTGGACAAAGCTTCAATGCTTGATGAGGCCATTGAGTATCTGAAGACTCTTCAGCTTCAACTACAGATTATGTCGATGGGAACTGGATTCTGTATGCCTCCGATGATGTTACCCACCGGATTGCAACACATACACGCACCGCACATGACTCATTTCTCTCCCATGGGTGTTGGAATGGGGATGGGAATGGGCATTGGTTTGGGTTTTGGGATGGGAATGCTTGACATGAGCAGTGGTTCCTCTGGTTGCCCTTTGATTCAGATGCCCCCCATGCACGGACAACAGTTCGCTTGCCCCCCTATGGCAGGGTCTAACCTTCAGATATTTGGGCTCCATGGTCAAGGACTTCCCATGTCTATGCCTCAGCCACCCTTTGTTCCTCTGTCGGGAGGGCCTTCTACAAAGTCAATCTCGTTACCAGTTGTCACAGGAGCTGCAACTCCTGTGGAAGTTCCGGATTCAGCTCTGCCTTCAAGTTCAAAGGATCCAATAGAAAACATAAACACACAAATGATGGCCAAGACAAGTGCCGAATGCTCACAGAATCAGACGTCTAATCAGGCAACAAAAGAAGGCTTTGAACAGTCTGCCATGGTGCAAAGAAATGATCGAACCCCACATGTTAGTGGAAATTGA 2145 0.4611 MPYSEHHQMAKGKLESTQTKKTNCSTDLAFVPDNEFVELVWENGQILMQGQSSRTRKSPSCTGFPSHTSKAQEKDGGDAVTPNIGRFGTMDSVLNDFSSLGTIGRIGLDQDDDIVRWLNYPLDDSLQHDYCSEFFSELSGVNLNALSEQNNPVPIDKNSSYGQIVSDSHMVSMHRGANPEQGNASKIVRVGPEPTRPRSNQLCSSPLQQSHRSRISDITSSNSNNAHQAPYGNSCQNLNSTGGPPNTKMQKQDPRPTRPPLQPSNNTGLMNFSHFLRPAALVKANLRSTDATAGLAIPSIDRFRSNDKVSAASISKPGESMMVESASGSISVTGYQSQSISMPGKVDVKPSMGKPLKEPLSAEKSEAICQEDAFHDNKSPDQVLGRTSSFTASTAIARPTNEKATKPVVASSSICSGSSAGGASNNPKHVLKRKSQDAEESEYPSEDVEEESVGVMKSATSRRGTGPKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQLQIMSMGTGFCMPPMMLPTGLQHIHAPHMTHFSPMGVGMGMGMGIGLGFGMGMLDMSSGSSGCPLIQMPPMHGQQFACPPMAGSNLQIFGLHGQGLPMSMPQPPFVPLSGGPSTKSISLPVVTGAATPVEVPDSALPSSSKDPIENINTQMMAKTSAECSQNQTSNQATKEGFEQSAMVQRNDRTPHVSGN* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01745 714 MobiDBLite consensus disorder prediction 49 80 - -
Eupl07g01745 714 Pfam Helix-loop-helix DNA-binding domain 475 521 IPR011598 GO:0046983
Eupl07g01745 714 MobiDBLite consensus disorder prediction 662 714 - -
Eupl07g01745 714 MobiDBLite consensus disorder prediction 395 478 - -
Eupl07g01745 714 CDD bHLH_AtPIF_like 471 533 IPR047265 -
Eupl07g01745 714 PANTHER TRANSCRIPTION FACTOR PIF3 1 688 IPR044273 GO:0003700|GO:0006355
Eupl07g01745 714 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 471 520 IPR011598 GO:0046983
Eupl07g01745 714 MobiDBLite consensus disorder prediction 197 253 - -
Eupl07g01745 714 MobiDBLite consensus disorder prediction 173 266 - -
Eupl07g01745 714 SMART finulus 477 526 IPR011598 GO:0046983
Eupl07g01745 714 MobiDBLite consensus disorder prediction 395 425 - -
Eupl07g01745 714 MobiDBLite consensus disorder prediction 49 69 - -
Eupl07g01745 714 MobiDBLite consensus disorder prediction 652 714 - -
Eupl07g01745 714 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 468 533 IPR036638 GO:0046983
Eupl07g01745 714 Gene3D - 467 528 IPR036638 GO:0046983
Eupl07g01745 714 FunFam Basic helix-loop-helix transcription factor 466 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01745 Eupl-Chr7 39534480 39539707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01745 402 634 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 48.936 4.14e-49 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl07g01745 HLH 7.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01745 K12126 - nnu:104585579 845.884