Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01735 ATGGCTAGGAAGAAGGTAAAGCTTGAATGGATTGCTAATGACTCGGCTAGGAGAGTCACCTTCAAGAAAAGGAAGAAGGGGTTGATGAAGAAGGTAAGTGAACTTAGCACCTTATGTGGGATCAATGCGTGCGCGATCATTTACAGTCCCTACGATTCACAACCGGATGTTTGGCCGTCTCCATCGGAAGCGCAACGTGCGCTTGCTAGGTTCAAGAGCTTGCCTGAGATGGAGCAAAGCAAGAAAATGACGAACCAAGAAGGTTTCCTTAGGCAAAGGATAACTAAATTGAAGGAGCAACTGAAGAGGCAGCAGCAGGAGAATCGAGAGTATGAGATAACACAAGTCATGTATCAAAGCTTGGCGGGTAAGGGGTTGCATGATGTGGGCAATGAGGATTTGAGCGATATGGCATGGTTGATTGATGAGAAGATGAAGGCAATTCAAGAGAGTATGGAGGTACTTAGGAGGACTACTCCCCAATTTGTGGCGGCAGTCGACAATGAGAGCAGGAGGAGGAGTGGAGAGAGTGGTGAGGAGGATAAGATGGGCTTAGAGGTAGCCATGGAGGCTCTACAGAGGCAACCATGGTTCATGGAAGTTATGAACCCTCATGAACATATAGGCTATGGTGGGGATGAGATGGTGGTGTCATATGGGGATAGTTCATGGGCTAATCCTTTCTTTCCTTGA 693 0.4733 MARKKVKLEWIANDSARRVTFKKRKKGLMKKVSELSTLCGINACAIIYSPYDSQPDVWPSPSEAQRALARFKSLPEMEQSKKMTNQEGFLRQRITKLKEQLKRQQQENREYEITQVMYQSLAGKGLHDVGNEDLSDMAWLIDEKMKAIQESMEVLRRTTPQFVAAVDNESRRRSGESGEEDKMGLEVAMEALQRQPWFMEVMNPHEHIGYGGDEMVVSYGDSSWANPFFP* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01735 230 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Eupl07g01735 230 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Eupl07g01735 230 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Eupl07g01735 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl07g01735 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl07g01735 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl07g01735 230 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Eupl07g01735 230 Coils Coil 87 114 - -
Eupl07g01735 230 PANTHER MADS BOX PROTEIN 3 137 - -
Eupl07g01735 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Eupl07g01735 230 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01735 Eupl-Chr7 39450619 39451311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01735 1 158 Type I MADS-box Gene Family AT5G48670 56.604 1.29e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl07g01735 SRF-TF 9.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01735 - - nnu:104585605 311.612