Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01725 ATGGATTTTGACGACTGGGATTTCAGCGCCGAAGAGCTCGATTCCCTCGAAAGAGACGCTTTGAGAAAGATTGCAGAGAGGAAATCTTCTTCTGCAACCGCCTCCGTCAGTTCCTCTTCTCAAGAATCTCACCACAACAAGGTACAAACTTTGTCTCCTGCAGCAAGAGCCTTGACCACATCGATTGCTCCAGGCGAAACTGAGGACTGTACTGCAAAGGAATTCCCCAAATTCTCTATCAGGTTCTTTCTTCATGCCAGCGGAAACATTGCTGCGAAGTTTCAATATCACCCAATACTTGTAGGTGCTGTCCGCAATATCCCCAAAGCTAGTTGGCATGCCAAAGAAAGGTTATGGATGTTCCCACTATCCTCTTTGTTATCTGCGGAAAAGGTTCTCAGTGAAATAAATGGTGCTAATGTTGAGGTAGAGAAGTTAGATCCCTTGGTACGGCGTGCTACTGCTGCTGCGTCTGCTGTTCCAGATCTACAAGATTTATATGATAGGATGCCAAGCTTCATTGAATCAAAACTCCTGCCATTTCAGCGAGATGGAGTTAGGTTTGTGTTGCAGCATGGAGGACGTGTCCTCTTAGCAGATGAGATGGGCCTTGGAAAGACTTTACAGGCAATTGCTGTTACGGCATGTATTCGTGACTCCTGGCCCGTCCTGGTTCTCACCCCATCTTCCTTACGTTTACATTGGGCTTCTATGATTCAACAATGGCTAAATATCCCTTCATCAGATATACTCGTGGTTTTATCCCAATGTGCTGGATCAAACAGGGGAGGGTTCACGATCGTACAGTCAAATGCGAAAGGGACCATTCATCTTGATGGTGTATTCAACATTATCTCTTATGATGTTGTACCTAAGTTACAGCGTGTTCTTATGACCTCAGAGTTTAAAATTGTGATTGCAGATGAGTCACACTTCTTGAAGAATGCTCAAGCAAAGAGGACAAGTGCTTCCCTTCCAGTTCTACAGAAAGCTCAATATGTGATTTTGCTCAGTGGGACTCCTGCTTTATCAAGACCAATTGAGCTATTCAAGCAGCTGGAAGCCTTGTATCCTGACGTATACAAAAATGTTCACGAGTATGGAAACCGATATTGCAAGGGTGGTATATTTGGACTCTACCAAGGTGCAAGTAACCATGAAGAGCTGCACAATTTGATGAAAGCAACTGTGATGATTCGCCGGCTTAAGAAAGATGTTCTTTCTGAGCTTCCTGTAAAGCGCAGACAACAGGTCTTCCTAGATTTGGCTGACAAAGATATGAAACAAATTAATGCTCTATTTCGTGAGTTGGAGGTAGTGAAAAACAAAATCAAGGCCTGCAAATCCAAGGAGGAGGTTGATACACTTAAATTCTCTGAGAAGAATCTTATTAATAAGATCTATACTGATTCCGCGGAAGCCAAGATTCCAGCTGTTCTAGATTACCTGGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTAATATTTGCACACCATCAGCCCATGATCGATTCGATAAACCAATTTCTTCTTAAGAAGAAAGTCGGTTGTATTCGTATTGATGGTGGTACCCCGGCAGCATCAAGGCAAGCTTTGGTTACTGATTTTCAGGAGAAAGATGATATCAGGGCAGCAGTGTTATCTATCAAAGCTGGAGGTGTTGGCTTAACTTTGACAGCGGCAAGCACTGTCATCTTTGCTGAGCTGTCATGGACTCCAGGTGACATAATTCAAGCAGAAGACCGTGTTCATCGGATTGGCCAGGTATCATCGGTCAATATATACTACCTGCTAGCAAATGATACAGTCGATGACATCATCTGGTATGCTCATGTCCCACAGATTATGCTTGGAGAGAAATATTTTCTTTGGTTGTGGTGGACTCTAATCTGCGATTTGCTGTCCAGGGATGTTGTTCAGAGCAAGTTGGAAAATTTGGGCCAGATGCTTGATGGCCATGAGAATACCTTGGAAGTCTCAGTCAGCCAACCAAGAAGCAGTCCTGCAAAGCAGAGAACGCTCGACTCTTTTATGAAGCGCTGTCATTCTTCTGCAGATAACCAAATGGGCGACTATGCACATCATCCAAAATTCAAAAATCCCAGAAACTGA 2112 0.4375 MDFDDWDFSAEELDSLERDALRKIAERKSSSATASVSSSSQESHHNKVQTLSPAARALTTSIAPGETEDCTAKEFPKFSIRFFLHASGNIAAKFQYHPILVGAVRNIPKASWHAKERLWMFPLSSLLSAEKVLSEINGANVEVEKLDPLVRRATAAASAVPDLQDLYDRMPSFIESKLLPFQRDGVRFVLQHGGRVLLADEMGLGKTLQAIAVTACIRDSWPVLVLTPSSLRLHWASMIQQWLNIPSSDILVVLSQCAGSNRGGFTIVQSNAKGTIHLDGVFNIISYDVVPKLQRVLMTSEFKIVIADESHFLKNAQAKRTSASLPVLQKAQYVILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGIFGLYQGASNHEELHNLMKATVMIRRLKKDVLSELPVKRRQQVFLDLADKDMKQINALFRELEVVKNKIKACKSKEEVDTLKFSEKNLINKIYTDSAEAKIPAVLDYLGTVIEAGCKFLIFAHHQPMIDSINQFLLKKKVGCIRIDGGTPAASRQALVTDFQEKDDIRAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDIIQAEDRVHRIGQVSSVNIYYLLANDTVDDIIWYAHVPQIMLGEKYFLWLWWTLICDLLSRDVVQSKLENLGQMLDGHENTLEVSVSQPRSSPAKQRTLDSFMKRCHSSADNQMGDYAHHPKFKNPRN* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01725 703 MobiDBLite consensus disorder prediction 28 51 - -
Eupl07g01725 703 FunFam Chromatin remodeling factor18 436 617 - -
Eupl07g01725 703 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 479 647 IPR001650 -
Eupl07g01725 703 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 687 - -
Eupl07g01725 703 Pfam Helicase conserved C-terminal domain 479 587 IPR001650 -
Eupl07g01725 703 FunFam Chromatin remodeling factor18 151 425 - -
Eupl07g01725 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 612 IPR027417 -
Eupl07g01725 703 Gene3D - 439 620 IPR027417 -
Eupl07g01725 703 SMART ultradead3 174 367 IPR014001 -
Eupl07g01725 703 Coils Coil 430 450 - -
Eupl07g01725 703 Gene3D - 149 426 IPR038718 -
Eupl07g01725 703 ProSiteProfiles HARP domain profile. 71 147 IPR010003 -
Eupl07g01725 703 SMART helicmild6 504 587 IPR001650 -
Eupl07g01725 703 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 359 IPR014001 -
Eupl07g01725 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 401 IPR027417 -
Eupl07g01725 703 CDD SF2_C_SNF 474 598 - -
Eupl07g01725 703 CDD DEXHc_HARP_SMARCAL1 178 401 - -
Eupl07g01725 703 Pfam SNF2-related domain 197 446 IPR000330 GO:0005524|GO:0140658
Eupl07g01725 703 MobiDBLite consensus disorder prediction 26 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01725 Eupl-Chr7 39334711 39358771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01725 455 607 RAD5 or RAD16-like Gene Family AT1G05120 33.544 2.84e-19 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl07g01725 SNF2_N 4.3e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01725 K14440 - nnu:104586042 1060.44