Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01671 ATGGGTCGTAATAAAGGAAAACTACCCATGAAGCCGATCGATCATGAGAGGTCTCGCAGAGTAACCTTCGGGAAGAGGAAGAAAGGTCTCAAGAAGAAAACATTCGAGTTCGTCACATTGTGCGGCGTCGAAGCTTGTATGGTTTGTTTCGGACCTGACGGAGAACTCGAGACGTGGCCAGAGAAACACACAGAAGTCGCTGCAATCATCAACCGATACAAAAGTCTCAGCAAAGATGATCAAGAGAAGCGGAAGCTTGATATCTCAAGCTTTATGGACGCTAAGAAGAAGAAACTTGAAGAAGAGCTTGATCGAACGCGCAAGGAGAATTCTAAATTGTTGTACGGAACGTGGGACATTCGGCTCGACGGGTTATCGGAGAAGGAGTTGAGAGATTTTGGAAGTCTGTTGGAATCTAAATTGGAGAAAGTGAGAGAGAAAGTAGAGATGTTGAAGGTGAATCAAAGCAGTGTAAAAGGAAAAGAGATCGAGATGGTAAGAGAAACTAATCAAAATCAGTCACCCTACTCGTTTGACATGCATCATCAACCATTTCTTATTCCTAGGCCCACCAGTGAATGTATTTACAATCCAATGATGTTTGATGCGTTACTCAATACGACGACAATGATCAGACCGTCGAATTATTACTGCGATACTGGTTGTAGTAGTACTGGTGTTTCATGGGCTCCACCAAGAGGGTCAATCTATAACCCTGGGTTTGAGATGGTGGAGAAGTTTGTCCCTCCAATGATTCCTCAACCTCCACCACTTCGGACTGTTTTGCCGTCGATGTTGCAACAATCTCAGCCGGTGATCAGGTTTCAGCCTCAGACGACTCATCAGTTGGGAGATGGATCCTTCAACTACTACTCACAAGATCTTGATCTTAAGACCTATGGAGAGAGATCAGGCGCTGTAATTCTCGTCTTCTCTGTAAAGAAAACCCTAGATCTTCTTCTTCAAGCTCTCTCACAGACATGGATGATAGCTGTGCCGTCTGCGCCGAGCCCCTCGAATGGGTCGCCTACGGACCGTGCGGCCATCGCGAGGTCTGCTCGACATGCGTCGCTCGTCTACGATTCATTTGCGACGATCGACGCTGCTGCCTCTGCAAGGCCGAATCCAATATCGTCTTTGTCACCAAGGTTAGGGGTTTCGATTCTTTGA 1170 0.465 MGRNKGKLPMKPIDHERSRRVTFGKRKKGLKKKTFEFVTLCGVEACMVCFGPDGELETWPEKHTEVAAIINRYKSLSKDDQEKRKLDISSFMDAKKKKLEEELDRTRKENSKLLYGTWDIRLDGLSEKELRDFGSLLESKLEKVREKVEMLKVNQSSVKGKEIEMVRETNQNQSPYSFDMHHQPFLIPRPTSECIYNPMMFDALLNTTTMIRPSNYYCDTGCSSTGVSWAPPRGSIYNPGFEMVEKFVPPMIPQPPPLRTVLPSMLQQSQPVIRFQPQTTHQLGDGSFNYYSQDLDLKTYGERSGAVILVFSVKKTLDLLLQALSQTWMIAVPSAPSPSNGSPTDRAAIARSARHASLVYDSFATIDAAASARPNPISSLSPRLGVSIL* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01671 389 SUPERFAMILY SRF-like 5 93 IPR036879 GO:0003677|GO:0046983
Eupl07g01671 389 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677|GO:0046983
Eupl07g01671 389 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677|GO:0046983
Eupl07g01671 389 PRINTS MADS domain signature 40 61 IPR002100 GO:0003677|GO:0046983
Eupl07g01671 389 PANTHER SERUM RESPONSE FACTOR HOMOLOG 6 169 - -
Eupl07g01671 389 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Eupl07g01671 389 Coils Coil 89 116 - -
Eupl07g01671 389 Gene3D - 15 99 IPR036879 GO:0003677|GO:0046983
Eupl07g01671 389 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
Eupl07g01671 389 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01671 Eupl-Chr7 38724244 38729087 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01671 5 157 Type I MADS-box Gene Family AT1G65300 32.298 9.08e-20 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl07g01671 SRF-TF 3.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01671 - - msin:131239132 143.28