Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01630 ATGTCGACTGCGGAACCAGCTGCGGCTTCGCTAGGTCCCCGATACGCACCTGATGACCCCACTCTTCCCAAACCTTGGAAAGGATTAATTGATGGAAGCACTGGCCTTTTGTACTACTGGAATCCTGAGACAAATATCACTCAATATGAAAGGCCGGCCACTTTGGCTCCTCCATTGCCCCCTGGACCACCTCCATCAGCTTCTACACCAAAGCTGGCTCCATTACCCATGGCCCGGACAATGCAACCAAATGGTGTGCTGGCTCAGCAGGGGCAGCAAATGTCCCAAGCCGCACAACAGCAGGGCCAACTTATGCCACAGCAGCAGGGGATGCAAATGGCACAAGGTGCTCAGCAGCAGGCAGCACAAATGACACCAGGAGTGCAACAACAGGGTCCACAACTGGCACAGCCCATGCACCAGCAGGGGCAGTTAATGCCTCAGCAGCTAAGGCAGCAAATGCCACAGCTGCCGGGACAGCAAATGCTGCAACAGCTGGGGCAGCAAACATCACAACAGCAAGGGCAGCAAATGCCTCATCAACAAGGGCAGCAGTTTCCACATCAGCAGCTTCAACAAATTCCATATCAGCAAGCCTTACATACACAGGGGCAGCAAATGTCACACCCCCAGGTACAGCAAATTGCACATCAACAGGGGCAGCAGTTTCCACCTCAACAAGGGCATAAAGTGGGGTTTCCACAGAGGGAGGATATCGAGTTTCAACAGGGAAAGAAAATTGGGTTTTCTCCATCTCATATCCAACAAGCTGGGGTCTCATCCCTTCACAACCTGCCTGCTGGAACTCATTCTGTTCAGATTCCACACATGGGTGTTCAATCAGTCCAGTCACAACAATTTGGCAGCTCTTCTGTTAACGCACCACAAACTGGTCCTTCTTTGGCTCAATTGCAGCAAACAGGGACTGATTCTATCCACGGACAACAAATGGGTGCACCCATGGTTCAAAATCAGGTTGGGTCAGCAATGATGCGTAACCAGCAACCTGGTGGGCCTACAATCGGATTGAAGATGGGGTATGAAGAAGATCAGCGTGGAAGATCTGGAAATGAGATCTATTTCAATGCTAACAAGGAAGGGCCACTGATGGTTCCCCAGCATCCAAAGCTTGCTGCTATTCCCATGGCCCGAAATCACCAGGAAATGAAGATGAGTGGTGTTCCTCCACAAAGTGTCGGACCTGGTCATTCTGGTGGATTAAACGCTGTGACGGGCCATGCCATGCCTCACATGTACAATCATGCTGGTGGTGGTCAAGCATTTCCCAATAACGCACCCATGAGACCACCTTCAAGAATGCTTGGTGATGTTAAAAATTTCTCACCTGCTGAAGTATACTGTCGACAGCATGAAGTTAATGCAACGGGTGAAAATGTTCCCGCTCCTTTCATGACCTTTGAAGCCACTGGTTTCCCTCCAGAGATACTCAGAGAGATACATTTTGCCGGTTTCTCTTCTCCCACCCCGATACAGGCACAGACATGGCCGATTGCACTGCAGAGTAGGGACATAGTGGCCATTGCCAAAACAGGATCTGGGAAGACCTTGGGCTATCTCATTCCTGCCTTTATTCATCTAAGACGGTGCCGAAATGATCCTCAGAATGGTCCAACAGTGTTGGTTCTAGCTCCCACGCGGGAACTTGCCACACAGATACAAGATGAGGCTATGAAGTTTGGTCGATCTTCTAGGGTCTCTTGCACGTGCTTATATGGTGGAGCTCCAAAGGGACCCCAGCTTAAAGAATTAGATCGAGGAGCTGACATTGTTGTGGCAACCCCTGGTCGGCTCAATGACATCCTCGAGATGAAAAAGATCGACTTCCGTCAAGTCTCTTTCCTCGTGCTTGATGAGGCGGATCGTATGCTTGACATGGGTTTTGAACCTCAAATTCGTAAGATTGTGAATGAGATCCCTCCACACAGGCAGACTCTCATGTACACGGCAACCTGGCCCAAGGAAGTCAGAAAAATAGCAGGAGATCTACTGATGAATCCTGTTCAGGTGAACATTGGCAGTGTTGATGAGCTTGCTGCAAACAAGGCCATCACACAGTATGTTGAGGTGGTCCCACAAATGGAGAAACAGAGGCGCTTGGAGCAGATTCTCAGAGCCCAAGAACGTGGATCCAAGGTCATTATCTTCTGTTCAACAAAGAGGTTGTGTGACCAGCTCGCACGCAGTATTGGGCGCACCTTTGGTGCTGCTGCAATTCATGGAGATAAGTCTCAGGGCGAGAGGGACTGGGTTCTGAACCAGTTTCGGAGTGGAAAGTCACCCATTTTAGTTGCTACTGACGTTGCTGCTCGGGGGCTTGACATTAAAGATATTAGGGTGGTGATCAACTATGATTTTCCGACTGGGATAGAAGATTATGTCCATCGAATTGGAAGGACTGGGAGGGCTGGTGCCACGGGGGTGTCATACACCTTCTTCTCTGATCAGGACTGGAAGTATGCTGCTGATTTGGTGAAAGTGTTGGAGGGGGCAAACCAGCGAGTGCCACCTGAAGTGCGGGAGATGGTGGTGCGTGGTGGGTCCAGTTTTGGTAAAGGCCGAGGTGGGATGAACCGTCGGGATTCTGGTGGTGGGCGTTGGGATTCTGGAGGCCGTGGTGGCATGAGAGATGGTGGCTTCAGTGGCCGGGGTGGCAGAGATGGTGGCTTCAGTGGCCGGGGTGGCATGAGAGATGGTGGCTTCAGTGGTCGTGGCGGGAGAAGTGACTTCTTAGGTGGACGTGGAAACCGGGGACGGGGATTCTCTGGGCCTGGTGGTGGTTCCGCTGGTCGTGGCCGGCATGACAGGGGCCCGCAGAACCGTTACAATAATATGGATGGGCGGGGACGGTATGACAACCGAAGAGGCATTGCAGGTAGGAGTAGAGGCAGAAGTTACAGCAGGAGTTACAGTCCAAGTCCTGATAGGGTTCGGACATGGGATTATAACAGGAGCAGAAGCCAAAGTAGGAGCAGGAGTCGTAGCAGGAGCCGGAGCTGGACCCGCAGTCGTAGTATTAGCAGGAGCCGTAGTCGAAGCCGCAGCCGCAGCCGCAGCTATGACAGATTTGAGAGGTCACATGAACGGAATTACAACCAGGATCCTCTAGGGCCAGGATATGTGGCCCCTCCAGAATCAAGGTTGTCTCCTATGTCGCCAGGTACTCAAGGTGGCACATTTCCAGGAATCGAGCAGGCAGGGCAGCTGCCGGTGGCTGAGAGTACTGGGCCTGGAGTTCCTGTGGCTGGAGCGGAGCCAAGCCTTCCCCCAGTGGCTGATCTGTAA 3303 0.5207 MSTAEPAAASLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNITQYERPATLAPPLPPGPPPSASTPKLAPLPMARTMQPNGVLAQQGQQMSQAAQQQGQLMPQQQGMQMAQGAQQQAAQMTPGVQQQGPQLAQPMHQQGQLMPQQLRQQMPQLPGQQMLQQLGQQTSQQQGQQMPHQQGQQFPHQQLQQIPYQQALHTQGQQMSHPQVQQIAHQQGQQFPPQQGHKVGFPQREDIEFQQGKKIGFSPSHIQQAGVSSLHNLPAGTHSVQIPHMGVQSVQSQQFGSSSVNAPQTGPSLAQLQQTGTDSIHGQQMGAPMVQNQVGSAMMRNQQPGGPTIGLKMGYEEDQRGRSGNEIYFNANKEGPLMVPQHPKLAAIPMARNHQEMKMSGVPPQSVGPGHSGGLNAVTGHAMPHMYNHAGGGQAFPNNAPMRPPSRMLGDVKNFSPAEVYCRQHEVNATGENVPAPFMTFEATGFPPEILREIHFAGFSSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFIHLRRCRNDPQNGPTVLVLAPTRELATQIQDEAMKFGRSSRVSCTCLYGGAPKGPQLKELDRGADIVVATPGRLNDILEMKKIDFRQVSFLVLDEADRMLDMGFEPQIRKIVNEIPPHRQTLMYTATWPKEVRKIAGDLLMNPVQVNIGSVDELAANKAITQYVEVVPQMEKQRRLEQILRAQERGSKVIIFCSTKRLCDQLARSIGRTFGAAAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSDQDWKYAADLVKVLEGANQRVPPEVREMVVRGGSSFGKGRGGMNRRDSGGGRWDSGGRGGMRDGGFSGRGGRDGGFSGRGGMRDGGFSGRGGRSDFLGGRGNRGRGFSGPGGGSAGRGRHDRGPQNRYNNMDGRGRYDNRRGIAGRSRGRSYSRSYSPSPDRVRTWDYNRSRSQSRSRSRSRSRSWTRSRSISRSRSRSRSRSRSYDRFERSHERNYNQDPLGPGYVAPPESRLSPMSPGTQGGTFPGIEQAGQLPVAESTGPGVPVAGAEPSLPPVADL* 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01630 1100 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Eupl07g01630 1100 SMART ultradead3 490 693 IPR014001 -
Eupl07g01630 1100 FunFam probable ATP-dependent RNA helicase DDX17 441 679 - -
Eupl07g01630 1100 MobiDBLite consensus disorder prediction 970 984 - -
Eupl07g01630 1100 SMART helicmild6 726 810 IPR001650 -
Eupl07g01630 1100 MobiDBLite consensus disorder prediction 940 965 - -
Eupl07g01630 1100 Pfam Helicase conserved C-terminal domain 702 810 IPR001650 -
Eupl07g01630 1100 CDD SF2_C_DEAD 690 819 - -
Eupl07g01630 1100 MobiDBLite consensus disorder prediction 86 105 - -
Eupl07g01630 1100 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 471 499 IPR014014 GO:0003724
Eupl07g01630 1100 Gene3D - 447 680 IPR027417 -
Eupl07g01630 1100 MobiDBLite consensus disorder prediction 161 228 - -
Eupl07g01630 1100 MobiDBLite consensus disorder prediction 1 28 - -
Eupl07g01630 1100 FunFam ATP-dependent RNA helicase RhlB 680 852 - -
Eupl07g01630 1100 CDD WW 23 51 IPR001202 GO:0005515
Eupl07g01630 1100 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 450 849 - -
Eupl07g01630 1100 MobiDBLite consensus disorder prediction 995 1019 - -
Eupl07g01630 1100 MobiDBLite consensus disorder prediction 54 71 - -
Eupl07g01630 1100 Gene3D - 16 55 - -
Eupl07g01630 1100 Pfam DEAD/DEAH box helicase 495 665 IPR011545 GO:0003676|GO:0005524
Eupl07g01630 1100 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 622 630 IPR000629 -
Eupl07g01630 1100 MobiDBLite consensus disorder prediction 114 148 - -
Eupl07g01630 1100 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 705 849 IPR001650 -
Eupl07g01630 1100 SUPERFAMILY WW domain 14 55 IPR036020 GO:0005515
Eupl07g01630 1100 MobiDBLite consensus disorder prediction 281 315 - -
Eupl07g01630 1100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 542 827 IPR027417 -
Eupl07g01630 1100 Gene3D - 681 851 IPR027417 -
Eupl07g01630 1100 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Eupl07g01630 1100 SMART ww_5 21 54 IPR001202 GO:0005515
Eupl07g01630 1100 MobiDBLite consensus disorder prediction 161 230 - -
Eupl07g01630 1100 MobiDBLite consensus disorder prediction 1020 1037 - -
Eupl07g01630 1100 MobiDBLite consensus disorder prediction 52 71 - -
Eupl07g01630 1100 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 502 676 IPR014001 -
Eupl07g01630 1100 MobiDBLite consensus disorder prediction 852 1100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01630 Eupl-Chr7 38119530 38135460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01630 469 849 Eukaryotic Initiation Factors Gene Family AT3G19760 33.594 1.43e-66 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01630 K12823 - ming:122088931 1102.43