Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01616 ATGGATGTTAATGGAGGAAGTTGCAGCTCTGCAACTCAAAGCGAAGAAGAGATGGACCTGAGGAGAGGTCCATGGACTGTTGAAGAAGACCTCCTACTCATGAATTACATTGGCAATCATGGTGAAGGTCGTTGGAATTCCCTCGCTCGATGTGCCGGTCTGAAACGAACCGGAAAAAGCTGCAGATTAAGATGGTTGAACTACTTACGTCCCGACGTTAGACGTGGAAACATAACCCTTGAAGAACAACTTCTGATTCTCGAACTCCATTCTCGTTGGGGAAATCGGTGGTCGAAGATCGCTCAACACTTGCCAGGAAGAACGGATAACGAGATAAAAAACTACTGGAGAACAAGGGTTCAGAAGCACGCAAAACAACTTCAATGCGACGTGAACAGCAAACAATTCAAAGACACCATGCGTTATCTATGGATGCCAAGGTTGGTCGAGAGAATCCGGGCAGCAGCCGCAGCTTCTTCGGGCAACACCATCACTCACCATCTCAACAACAACAACAACAACAACAACAACAACAATCCACACTTCACCGCCGGTCAGTACCTGAACGCGGGCAGCATGAACGACTTCAGGGGTGCGCAGATTAATCCAAGTTTCACCCCTGAGAATTCTAGCACGGCTGCTTCATCAGACTCTCTAGGGACCCAAGTCTCCCCGGTTTCGGAACTCGCAGATTACTACACTTTTCAGGGAAATAACTATCATATCAATAATACCCAAAATACCCAGATTAATTACCAAGAATCCCTAACTAGTCCCTCTGGTTACTTTAACCAAGGATTAGAATTTCAAGGCGTGGAGCAGAACAATGTTTGGTCAGGCAGTGAGGACGTGTCGGAGAATTTGTGGAATGCTGAGGACATATGGTTCTTACAGAACCAGCTCTGCAATGGTGTTTAG 918 0.4662 MDVNGGSCSSATQSEEEMDLRRGPWTVEEDLLLMNYIGNHGEGRWNSLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLQCDVNSKQFKDTMRYLWMPRLVERIRAAAAASSGNTITHHLNNNNNNNNNNNPHFTAGQYLNAGSMNDFRGAQINPSFTPENSSTAASSDSLGTQVSPVSELADYYTFQGNNYHINNTQNTQINYQESLTSPSGYFNQGLEFQGVEQNNVWSGSEDVSENLWNAEDIWFLQNQLCNGV* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01616 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Eupl07g01616 305 CDD SANT 24 69 IPR001005 -
Eupl07g01616 305 Gene3D - 22 74 - -
Eupl07g01616 305 MobiDBLite consensus disorder prediction 163 220 - -
Eupl07g01616 305 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Eupl07g01616 305 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Eupl07g01616 305 FunFam MYB transcription factor 79 142 - -
Eupl07g01616 305 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Eupl07g01616 305 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Eupl07g01616 305 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 230 IPR044676 GO:0003700|GO:0006355|GO:0043565
Eupl07g01616 305 Gene3D - 79 142 - -
Eupl07g01616 305 MobiDBLite consensus disorder prediction 1 21 - -
Eupl07g01616 305 CDD SANT 95 118 IPR001005 -
Eupl07g01616 305 SMART sant 21 71 IPR001005 -
Eupl07g01616 305 SMART sant 74 122 IPR001005 -
Eupl07g01616 305 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Eupl07g01616 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Eupl07g01616 305 FunFam Myb transcription factor 22 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01616 Eupl-Chr7 37957074 37958860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01616 15 297 MYB Transcription Factor Family AT3G06490 55.700 1.50e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl07g01616 Myb_DNA-binding 5.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01616 K09422 - nnu:104607058 463.381