Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01574 ATGCATGGCGAGAATAAGGAATTCCCTACAGAGACGGAAGTCGACGATACGAATCGCTCCAATTTTTCGGATGAGAATCTCGAGGTTTCGATCGATCGGAGCTTCGTGTATCCGGTTCTCCCTACTGAGAATGGCGTACACTCTTCCCGGAGCTTGGAGCCGCCTGAGTCACTATTGGAGAAGTCGAAGCTTTTCTACCAGAAACTGAGGGAGTTTCACGAATCATCCGGACTGAGTCTTGTGGCTAGCGTCGCAGGCAGCGTCTTGGACTTATATATGCTCTACGCAGAAGTGACGAGGAGGGGAGGATTTGCACGGGTTACTATGGATGGAAGATGGTCTGAAGTTGCATCTGCTGTGGACTTTACAAGCAGAATTCCAAAACCTTCTTTTCAACTTCAAGAACTTTATGCAGATCTTCTTTACCAGTTTGAGCTAATTTACTTTTTTGGGACACATGGGAAACCAGCTGCACCTCCAGGTCATCCTTCCAGTCCTGGAGACTGCCCAACAGTGAAAAGGAAGCGACAGGACAATATTTGCGGATTATCTAGAGTCTCAGTTGATCCTGGAAGCCAAGTAGGCAATACTGTTGTCGGTGTAATTGAAACCGAATTTGACAGTGGTTATCTGATAACTGTCACGGTCAACTCAGAGAAGCTCAATGGATTACTTTATCACATTGAAGACTCGGCTGGGGAGCAGTTTGCTATTGTCCCAAGTCTAATGGATGGTGTGGGCTTGGAGGATTCTGATTCTGAGCCAGTGGGTCTGCAAATTCAAGTGGGGTCTGCTAAACGAGAACCAACTGCGCAATCATCATCAAAAAAGGAGACTAAACTAAAGCCAACTGTGGAATCATCATCAAAAAAAGAGATGAAGAAGAAGGACCCAGAAGCTCCCCGGGGAATAAGAAGTGCTTATCAGTTCTTCCTCTGCAAGGAGTGTGATCGGTTAAAGAAAATGCATGGAGAAAGCTTGGGCCGGAACATCCGTAAAAGGGTGATAGATGCATGGAAGTGTCTCTCTGAGAACGATCGACTGCCATACGTTGAGGAAAGCCGCAAGGACAAGGAACGGTTCGACCGAGAAATGGTTGCTTACAAGGAGCGTCGAAACATGCAGACTAGCAAGGCAGAGCACAAGTCTTACAACCCAGACCAAGAAATGGTTGCTTACAAGGAGTGTGGAAACATGCAGACTAGCAAGGCAGAGCACAAGTCTTACAATCCAGAGGCAAGCGTGGCTCCGTTCCAGGATGTCTACCATGTCTCATTGCAGGCAGAAGAAACAGATAAGTTACTTGAGCTTGATGAATCAATGGTCGAGCTTGCAGTTCAATTAATGGAAAACGCACGGCAGCTTGACGCCACATTACAGATTGGGTTGGACAACTGTTGTGGGTCCCTCGATATATCCATCTGA 1425 0.4688 MHGENKEFPTETEVDDTNRSNFSDENLEVSIDRSFVYPVLPTENGVHSSRSLEPPESLLEKSKLFYQKLREFHESSGLSLVASVAGSVLDLYMLYAEVTRRGGFARVTMDGRWSEVASAVDFTSRIPKPSFQLQELYADLLYQFELIYFFGTHGKPAAPPGHPSSPGDCPTVKRKRQDNICGLSRVSVDPGSQVGNTVVGVIETEFDSGYLITVTVNSEKLNGLLYHIEDSAGEQFAIVPSLMDGVGLEDSDSEPVGLQIQVGSAKREPTAQSSSKKETKLKPTVESSSKKEMKKKDPEAPRGIRSAYQFFLCKECDRLKKMHGESLGRNIRKRVIDAWKCLSENDRLPYVEESRKDKERFDREMVAYKERRNMQTSKAEHKSYNPDQEMVAYKECGNMQTSKAEHKSYNPEASVAPFQDVYHVSLQAEETDKLLELDESMVELAVQLMENARQLDATLQIGLDNCCGSLDISI* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01574 474 MobiDBLite consensus disorder prediction 271 300 - -
Eupl07g01574 474 SUPERFAMILY HMG-box 284 371 IPR036910 -
Eupl07g01574 474 Coils Coil 351 371 - -
Eupl07g01574 474 MobiDBLite consensus disorder prediction 1 22 - -
Eupl07g01574 474 ProSiteProfiles ARID domain profile. 59 149 IPR001606 GO:0003677
Eupl07g01574 474 Pfam ARID/BRIGHT DNA binding domain 62 145 IPR001606 GO:0003677
Eupl07g01574 474 Gene3D High mobility group box domain 290 389 IPR036910 -
Eupl07g01574 474 SMART bright_3 60 150 IPR001606 GO:0003677
Eupl07g01574 474 SMART hmgende2 300 370 IPR009071 -
Eupl07g01574 474 Pfam HMG-box domain 299 368 IPR009071 -
Eupl07g01574 474 SUPERFAMILY ARID-like 58 154 IPR036431 GO:0003677
Eupl07g01574 474 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 301 369 IPR009071 -
Eupl07g01574 474 MobiDBLite consensus disorder prediction 1 23 - -
Eupl07g01574 474 Gene3D - 47 156 IPR036431 GO:0003677
Eupl07g01574 474 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 50 411 - -
Eupl07g01574 474 SMART ARID_2 56 145 - -
Eupl07g01574 474 MobiDBLite consensus disorder prediction 262 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01574 Eupl-Chr7 37464625 37469883 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01574 56 369 ARID Transcription Factor Family AT3G13350 30.960 1.40e-36 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Eupl07g01574 ARID 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01574 - - msin:131231681 238.039