Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01538 ATGGAAGATTTATACAGGATGGATCCTGCGATCTCTTGTTCGGATGAGATCGCTGGAGTCGGAAATTTTACTACGCCTACTGGATTTCACGGCCAGGTTGAAAATATGCTTCAATTCCAAGCGAACGAGACGGATATCCGTGGATCTGAGATGTCCGATCTGATCAAAGCTCAGATCGCTAGTCATCCTCGTTATCCAAGCTTAATATCTGCTTACATAGAATGTCGAAAGGTCGGGGCGCCACCAGAAATGGCGTTGCTTCTGGAAGAAATCGGCCGAGAGAGACATCCGAGCAGTGTTTGTAGTGAGATCGGAGCCGATCCAGAGCTCGACGAGTTCATGGAATCGTATTGCGAGGTTTTGCTTAGATACAAGGAGGAGTTGTCTAAGCCGTTTGATGAAGCGACCACTTTCTTGAGCAGGATCGAGACGCAGCTAAGTAACCTTTGTAAAGAGACGTCGACAACGGCGACCTCCGGGATTTACCACTCAGAAGCAACTGGGTCTTCAGAAGAGGAGCTAAGCTGTGGGGAGGTGGAAGCATCAGAAAGCCAAGAATCCTCCGGTCCCCGTCCAGGTGATCAGGAACTAAAAGAAATGCTTCTGCAGAAATACAGCGGTTATCTTAGCAGTCTCAGGAAGGAATTCTTGAAGAAGAGGAAGAAAGGGAAGCTACCGAAGGATGCAAGAATGACATTACTGGACTGGTGGAACACCCATTATAGATGGCCGTATCCTACGGAAGAAGAGAAGATGAAACTAGCGGAAGTTACGGGACTTGACCAGAAGCAGATTAACAATTGGTTCATCAACCAGAGGAAGCGGCATTGGAAGCCATCTGAAGACATGCGCTTTGCTCTCATGGAGGGGGTCAGTGGTGGGGGTGGGCCTTCCATGTATTGCGACATTGGAGGAGGAACTGGGAATGATGACATGTGA 939 0.4856 MEDLYRMDPAISCSDEIAGVGNFTTPTGFHGQVENMLQFQANETDIRGSEMSDLIKAQIASHPRYPSLISAYIECRKVGAPPEMALLLEEIGRERHPSSVCSEIGADPELDEFMESYCEVLLRYKEELSKPFDEATTFLSRIETQLSNLCKETSTTATSGIYHSEATGSSEEELSCGEVEASESQESSGPRPGDQELKEMLLQKYSGYLSSLRKEFLKKRKKGKLPKDARMTLLDWWNTHYRWPYPTEEEKMKLAEVTGLDQKQINNWFINQRKRHWKPSEDMRFALMEGVSGGGGPSMYCDIGGGTGNDDM* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01538 312 SMART ELK_2 196 217 IPR005539 GO:0003677
Eupl07g01538 312 Pfam KNOX1 domain 55 96 IPR005540 GO:0003677|GO:0005634
Eupl07g01538 312 SMART KNOX2_2 100 151 IPR005541 GO:0003677|GO:0005634
Eupl07g01538 312 Pfam KNOX2 domain 104 150 IPR005541 GO:0003677|GO:0005634
Eupl07g01538 312 Gene3D - 214 287 - -
Eupl07g01538 312 ProSiteProfiles 'Homeobox' domain profile. 216 279 IPR001356 GO:0003677
Eupl07g01538 312 Pfam ELK domain 196 217 IPR005539 GO:0003677
Eupl07g01538 312 CDD homeodomain 228 280 IPR001356 GO:0003677
Eupl07g01538 312 ProSitePatterns 'Homeobox' domain signature. 254 277 IPR017970 GO:0000981|GO:0006355
Eupl07g01538 312 SUPERFAMILY Homeodomain-like 218 288 IPR009057 -
Eupl07g01538 312 SMART HOX_1 218 283 IPR001356 GO:0003677
Eupl07g01538 312 SMART KNOX1_2 53 97 IPR005540 GO:0003677|GO:0005634
Eupl07g01538 312 Pfam Homeobox KN domain 236 275 IPR008422 GO:0003677|GO:0006355
Eupl07g01538 312 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 66 286 - -
Eupl07g01538 312 ProSiteProfiles ELK domain profile. 196 216 IPR005539 GO:0003677
Eupl07g01538 312 MobiDBLite consensus disorder prediction 160 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01538 Eupl-Chr7 37023511 37035536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01538 54 293 Homeobox Transcription Factor Family AT1G23380 57.430 4.27e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Eupl07g01538 KNOX2 3.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01538 - - nnu:104598781 498.434