Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01522 ATGGAGGACAGAGAAGTTGCATTGTTTGTGGAGAATTTGATCACTGCTTCAATTCCACAGTGTAGAATCTGCCATGAAGAAGAAGAACTTGGAAGCTCTAATAGTTTGGAAGCTCCTTGTGCTTGTTCTGGAACTGTGAAGTTTGCACATAGAGAATGCATACAGAAGTGGTGCAACGAGAAGGGAAACACCAGTTGTGAAATCTGTCTCCAGAAATTTGAACCTGGGTACACTGCACCCCCCAAAAAAGCTCAAGTGGCTGATGTAGCAGTGACAATCAGAGGAAGTTTGGAGGTTCCAAGCCAAAATCAGGAGCTACATAATCCTGGATTAATGGCGATTGCGGCCGATGGCGGATTCGTCGAAGACGACTACTCCGAATGCTCTTCTGCGGCTGAAAGAAGCGCAAATTGCTGTCGATCAGTAGCTCTCACTTTTTCAATGCTTTTGCTTGTGAGAGTCCTTCTCTCTGTGATCACTGCTGGAACTGACAACTACGCATTCACACTTCTTACTTTACTTGTTCTAAGGGCTGGAGGAATTCTTCTCCCACTTTATATAATATTTCGAACTATTGCAGCGATCCAAAACAGCCTGCAGCGGTTGTATCATGTTAGTTCCCTGATTCTTCTTAATGAATTTTGCAAAGTTAACTTTTTTAATCTTTATCACCAAAAAATAAGTTGTTTAATCTAA 696 0.421 MEDREVALFVENLITASIPQCRICHEEEELGSSNSLEAPCACSGTVKFAHRECIQKWCNEKGNTSCEICLQKFEPGYTAPPKKAQVADVAVTIRGSLEVPSQNQELHNPGLMAIAADGGFVEDDYSECSSAAERSANCCRSVALTFSMLLLVRVLLSVITAGTDNYAFTLLTLLVLRAGGILLPLYIIFRTIAAIQNSLQRLYHVSSLILLNEFCKVNFFNLYHQKISCLI* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01522 231 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 18 201 IPR033275 -
Eupl07g01522 231 Pfam RING-variant domain 21 69 IPR011016 GO:0008270
Eupl07g01522 231 Pfam Protein of unknown function (DUF3675) 75 192 IPR022143 -
Eupl07g01522 231 SMART ringv_2 20 70 IPR011016 GO:0008270
Eupl07g01522 231 FunFam E3 ubiquitin-protein ligase MARCH4 10 79 - -
Eupl07g01522 231 ProSiteProfiles Zinc finger RING-CH-type profile. 13 76 IPR011016 GO:0008270
Eupl07g01522 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 79 IPR013083 -
Eupl07g01522 231 CDD RING_CH-C4HC3_MARCH 21 69 - -
Eupl07g01522 231 SUPERFAMILY RING/U-box 19 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01522 Eupl-Chr7 36789958 36793492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01522 19 69 C3H Transcription Factor Family AT2G37950 39.216 8.62e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01522 - - nnu:104598799 275.018