Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01469 ATGGGAAGGGGAGGGGAATTGAATTTAGAACGCAATATAAAGAAAAGGATTCGTTCCAAAGGTACCAGTTCGGATGGTTCAGATGAGGACTTCATATTGGGAGAAGATGAAGAATTTGATGATTCCGAGGGATCCTACGCTTCTTGTGCCGGAGACTCATTGGAAGAGAGGTTTGATGAAGGGGAGGAGAGGAGCGTTGTTAGATCGAGAGTCAAAACGGGTAATTCAGGTAGGCGAGAATCTAGGGTTGTTAAACGGGCGCATAAGAAAATTAGGGTTTCAGATGATGAAGAAGAAGAAGATTGTTATTTTGATGAGGATGATGAGGAATTCATGCCCGACGGGATTGACTGTGTAGATGAGGAGGAAGAATTGCTGGTCAAGAAGAAGAGTAAGGTGAAGAAGAGAGTCTCCTGTAAAAAGTTATTGATAAAAAGTCAAAAAAGGAAGAGAAAATCCAAGGTTTCGAAGAAGCCCTTGAAAAAGAAGCAAAGAAGGAGATTGCTGGAAAGGAGTGCAGCAAGCTCTGATGATGAATTCATAATTGACAATATGGTTATCTGGGAGGATAAAAAGAAGCCGACAAGGTCTGGGAGAGGGAAGAAGAGATTGGTTGTGCACTCGGATTCTGATTTTGTTTCTTCTGGGCATTCGGATCATGAGTACACGATCTCTGAGGAAGAGCGGGAGTCATTGAGAGAAGCCAGCAATTTTTGTGGGAATCTGACAACTTGCTTGAGGAGTTCCTCTTTGTCAAAGAGTTTGCAAGTAGATGGAGCTTCAAACTGTCAGCAACGGAAACCGGCAGGAAGAAAGGGTAAAGAGAAGGTTGAGGATTTACTGAATGCTTTAGTAATGCAAGTGTGTGGGATTTGTCTGTCAGAAGAAGGAAAGGGGACAATACGGGGAACATTGAACTGTTGCAGTCATTATTTTTGTTTTGCTTGCATAATGCAGTGGTCGAAGGTGGAATCTCGTTGCCCACTGTGCAAACAGAGGTTCGAAACGATTAGTAAGCCTGCCAGGTCGAACATAGGGATCGATCTAAGGAATATGGTGATCCAGGTTCCTAAGCGTGAGCAGGTTTATCAACCTTCTGAAGAAGAAATGAGGGGCTATCTCGATCCATATGAAAATGTGGTTTGCATGGAATGCAAGCATGGTGGGGATGATAACCTTATGTTACTATGTGACATCTGTGATTCCCCTGCACACACCTATTGTGTTGGTCTAGGAAAGGAAGTACCTGAGGGTAATTGGTATTGTGAAGGTTGCAGGGCTTCTGATCCAGGATCATATTCACAAATTCAAGATCCAGTTCCCAATCAGGGAACAAGCAATATCAATGTCCCCTCTGAGCTATCCACGGTTGGAATCAATGTGGAAGATTTTGACAAAACTACCCAATATTTGGTGTCTACACCGGATCCATCCTTTTGCCAAGGAATTGGGATTCTTCCATCTCCAAGATGTCCTGTTGTAGAAGATGTTCGTGTGGCATCGCCATCTGGAGCAGGGGCATCAACTCTCTCAGGGAGACGCAGGACATTACGTCAGATACTGAATCTGCTTTCTAGCAATAGGATGAGTCAAGTGGTTGAAATGGTTGCCAGAACTAATGGGATTTCACATGGCAATGTAGAAGGTGAGGTTGTCGAGTCTGAAGTTGAGCAGGGTGCAGAGACAATTATTCAGCTTGCAGGAACGTTAGTGAGTAGTGAGCTCCATTCTGTAGTAGTTGAGGGTTTTGCACAGGATGCTAACTCTTGTACAGTGCAAGACAAGGATCCTGTTTCTGCTGGATTAAGCCATTTGAGGAGGCAAGTAACTCAGAGTCCAGGTGCTTCCATTGCCAATAGTTCAGCGAGTGGAAATTTATTTGCTGAGCTTGAGCAGATCAATCCGATATTGGGTTACGAACAAGAACAAAGCAAGCCTGTCATTGATTCTGATGATAGCATTTCTCGCCACATGTATGGAGAGGAGAGTCATTTGCATGCAGAAGGTGCGAAAGGAGCAAGTGCAGCATATGGTGAGAAGCCATTTGAAACGCTTATCCAGAGATACTATAGGTATGTGTACTTTGCTGTTGGACATCTCAATTTCATCTTTGAAGTGCTAATAAAGGTTTCTCTTAGATATATGCAAGGTTATGCATTTTACTCTCAGAATGTCGCAACTCCCATTACTGTAAATTATAGGCATAAATATTATTAA 2217 0.4317 MGRGGELNLERNIKKRIRSKGTSSDGSDEDFILGEDEEFDDSEGSYASCAGDSLEERFDEGEERSVVRSRVKTGNSGRRESRVVKRAHKKIRVSDDEEEEDCYFDEDDEEFMPDGIDCVDEEEELLVKKKSKVKKRVSCKKLLIKSQKRKRKSKVSKKPLKKKQRRRLLERSAASSDDEFIIDNMVIWEDKKKPTRSGRGKKRLVVHSDSDFVSSGHSDHEYTISEEERESLREASNFCGNLTTCLRSSSLSKSLQVDGASNCQQRKPAGRKGKEKVEDLLNALVMQVCGICLSEEGKGTIRGTLNCCSHYFCFACIMQWSKVESRCPLCKQRFETISKPARSNIGIDLRNMVIQVPKREQVYQPSEEEMRGYLDPYENVVCMECKHGGDDNLMLLCDICDSPAHTYCVGLGKEVPEGNWYCEGCRASDPGSYSQIQDPVPNQGTSNINVPSELSTVGINVEDFDKTTQYLVSTPDPSFCQGIGILPSPRCPVVEDVRVASPSGAGASTLSGRRRTLRQILNLLSSNRMSQVVEMVARTNGISHGNVEGEVVESEVEQGAETIIQLAGTLVSSELHSVVVEGFAQDANSCTVQDKDPVSAGLSHLRRQVTQSPGASIANSSASGNLFAELEQINPILGYEQEQSKPVIDSDDSISRHMYGEESHLHAEGAKGASAAYGEKPFETLIQRYYRYVYFAVGHLNFIFEVLIKVSLRYMQGYAFYSQNVATPITVNYRHKYY* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01469 738 SMART PHD_3 381 426 IPR001965 -
Eupl07g01469 738 CDD RING-HC_Topors 287 334 - -
Eupl07g01469 738 MobiDBLite consensus disorder prediction 29 43 - -
Eupl07g01469 738 ProSiteProfiles Zinc finger PHD-type profile. 379 428 IPR019787 -
Eupl07g01469 738 MobiDBLite consensus disorder prediction 146 168 - -
Eupl07g01469 738 SUPERFAMILY FYVE/PHD zinc finger 351 426 IPR011011 -
Eupl07g01469 738 ProSitePatterns Zinc finger RING-type signature. 308 317 IPR017907 -
Eupl07g01469 738 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 353 IPR013083 -
Eupl07g01469 738 SMART ring_2 289 330 IPR001841 -
Eupl07g01469 738 MobiDBLite consensus disorder prediction 53 81 - -
Eupl07g01469 738 Pfam PHD-finger 382 427 IPR019787 -
Eupl07g01469 738 SUPERFAMILY RING/U-box 288 337 - -
Eupl07g01469 738 MobiDBLite consensus disorder prediction 8 25 - -
Eupl07g01469 738 MobiDBLite consensus disorder prediction 146 171 - -
Eupl07g01469 738 PANTHER F18C1.6 PROTEIN 1 634 - -
Eupl07g01469 738 Pfam Ring finger domain 288 331 IPR001841 -
Eupl07g01469 738 ProSiteProfiles Zinc finger RING-type profile. 289 331 IPR001841 -
Eupl07g01469 738 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 354 430 IPR013083 -
Eupl07g01469 738 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01469 Eupl-Chr7 36125139 36128350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01469 376 425 C2H2 Transcription Factor Family AT3G01460 45.098 9.44e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl07g01469 PHD 1.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01469 - - ming:122083002 559.296