Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl07g01386 | ATGAGTGGACGTGCAAGTCGAACTCTTTACGTCGGCAATCTCCCTGGTGATATTCGTGAGAGAGAGGTAGAAGATATATTTTACAAGTATGGGCCTATCGTCGATATTGATCTGAAGATCCCACCAAGACCCCCAGGTTATGCTTTTATTGAGTTTGAAGATGCTCGCGATGCTGAAGATGCTATTCGTGGCCGTGATGGGTATAACTTTGATGGGCATCGACTGCGGGTGGAACTTGCACATGGTGGGCGAGGACAGTCGTCATCAATAGATCGCCATAGTAGTCACAATGGTGGTGGTGGTGGTCGTGGTGGAGTCTCTAGGCGCTCCAAATATCGTGTGTTGGTCTCTGGACTACCTTCTTCTGCTTCATGGCAAGACCTAAAGGATCACATGCGTCGAGCTGGAGACGTCTGTTTCTCTCAAGTGTTCCGTGATGGTGGCGGCACTACAGGGATTGTGGACTACACAAACTATGATGACATGAAATATGCAATTAGAAAACTTGATGACTCCGAGTTTCGGAATGCTTTTTCTCGTTCGTACATACGGGTGAAGGATTATGAATCAAGGCGGAGCCTCTCCAGGAGCCGCAGTCGATCCAACTCAAGAAGCAGAAGCGCTAGTCGCAGCTACAGTCGAAGCAAGAGCCGGAGCAAGTCTCCAAAGGCCAAATCTTCTCGATTGTCTAGATCTCGATCGAGGTCTGTATCTTCACGTTCTCGTTCAGGGTCAAAGCCGCGCTCTTTGTCAAGATCTCTATCAAGATCCAGATCTCCATTACCTTCTCCTCCTCGCGACAAACATGTGAGTAAAAGCCCAAAGAAGCGGAGCCCAAAGAAGCTGAGCCCAAAGAAGCGGAGCCCCAGCAGCAGCCGGAGTAGGAGCAAGAGCCGAAGCCGAAGCTTATCTCGGTCTCGATCACCGGCTGTAAAAGTGAGATCTGATCGCAGTCAATCCGTCGACTCCAGAGGTCGTTAA | 981 | 0.4975 | MSGRASRTLYVGNLPGDIREREVEDIFYKYGPIVDIDLKIPPRPPGYAFIEFEDARDAEDAIRGRDGYNFDGHRLRVELAHGGRGQSSSIDRHSSHNGGGGGRGGVSRRSKYRVLVSGLPSSASWQDLKDHMRRAGDVCFSQVFRDGGGTTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRSYIRVKDYESRRSLSRSRSRSNSRSRSASRSYSRSKSRSKSPKAKSSRLSRSRSRSVSSRSRSGSKPRSLSRSLSRSRSPLPSPPRDKHVSKSPKKRSPKKLSPKKRSPSSSRSRSKSRSRSLSRSRSPAVKVRSDRSQSVDSRGR* | 327 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl07g01386 | 326 | Gene3D | - | 2 | 112 | IPR012677 | - | |
| Eupl07g01386 | 326 | MobiDBLite | consensus disorder prediction | 231 | 260 | - | - | |
| Eupl07g01386 | 326 | MobiDBLite | consensus disorder prediction | 188 | 326 | - | - | |
| Eupl07g01386 | 326 | SUPERFAMILY | RNA-binding domain, RBD | 6 | 178 | IPR035979 | GO:0003676 | |
| Eupl07g01386 | 326 | CDD | RRM2_SF2_plant_like | 112 | 187 | - | - | |
| Eupl07g01386 | 326 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 112 | 190 | IPR000504 | GO:0003723 | |
| Eupl07g01386 | 326 | MobiDBLite | consensus disorder prediction | 270 | 302 | - | - | |
| Eupl07g01386 | 326 | FunFam | serine/arginine-rich splicing factor SR34A-like | 112 | 189 | - | - | |
| Eupl07g01386 | 326 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 76 | IPR000504 | GO:0003723 | |
| Eupl07g01386 | 326 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 114 | 176 | IPR000504 | GO:0003723 | |
| Eupl07g01386 | 326 | PANTHER | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN | 6 | 259 | - | - | |
| Eupl07g01386 | 326 | CDD | RRM1_SF2_plant_like | 8 | 79 | - | - | |
| Eupl07g01386 | 326 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 82 | IPR000504 | GO:0003723 | |
| Eupl07g01386 | 326 | Gene3D | - | 113 | 188 | IPR012677 | - | |
| Eupl07g01386 | 326 | SMART | rrm1_1 | 8 | 78 | IPR000504 | GO:0003723 | |
| Eupl07g01386 | 326 | SMART | rrm1_1 | 113 | 184 | IPR000504 | GO:0003723 | |
| Eupl07g01386 | 326 | MobiDBLite | consensus disorder prediction | 82 | 107 | - | - | |
| Eupl07g01386 | 326 | MobiDBLite | consensus disorder prediction | 211 | 230 | - | - | |
| Eupl07g01386 | 326 | FunFam | ASF/SF2-like pre-mRNA splicing factor SRP31 | 1 | 111 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl07g01386 | Eupl-Chr7 | 34922768 | 34932736 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl07g01386 | 9 | 174 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 22.674 | 4.47e-06 | 46.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl07g01386 | K12890 | - | psom:113350280 | 353.984 |