Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01379 ATGGGTGTAGAAGAAATCAAGGTAGGGGCTGTTGTTCCTGAGTCTGTCTTGAAGAAGAGGAAGAGAAGTGAGGAATGGGCTTTGGTGAAAAACCAAGCCTTGGAAGCTCAGAAAAAGAAGAACTCTGAGAACAGAAAGCTCATCTTCAAGAGGGCTGAACAATATGCAAAAGAATACACAGAACAGGAGAAAGAACTGATCAGATTGAAGCGAGAGGCCAAGCTGAAAGGAGGCTTCTATGTTAACCCAGAGGCCAAGCTGCTGTTTATTATCCGTATTCGTGGTATCAATGCGATTGACCCGAAGACGAGGAAGATCTTGCAACTTCTCCGTTTGAGGCAGATATTCAATGGTGTGTTTCTCAAAGTGAACAAAGCAACCGTGAACATGTTGCGTAGAGTTGAGCCTTATGTGACATACGGATACCCTAATCTTAAAAGTGTGAGGGAATTGATTTACAAGAGGGGTTATGGAAAGCTGAACAAGCAGCGGATTGCTTTGACTGATAATTCGATCATTGAACAGGCCCTGGGCAAGAATGGGATTATCTGCGTGGAAGATCTGATTCACGAGATCATGACGGTTGGACCCCATTTCAAGGAAGCAAACAATTTCTTGTGGCCGTTCAAGTTGAGTGCACCTTCAGGTGGTTTGAAGAAGAAGAGAAACCATTATGTTGAGGGTGGAGATGCTGGAAACCGCGAAGATTACATCAATGAACTCATCAGGAGGATGAACTAG 741 0.4413 MGVEEIKVGAVVPESVLKKRKRSEEWALVKNQALEAQKKKNSENRKLIFKRAEQYAKEYTEQEKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAIDPKTRKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGKNGIICVEDLIHEIMTVGPHFKEANNFLWPFKLSAPSGGLKKKRNHYVEGGDAGNREDYINELIRRMN* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01379 246 ProSitePatterns Ribosomal protein L30 signature. 106 138 IPR018038 -
Eupl07g01379 246 Pfam Ribosomal protein L30p/L7e 88 138 IPR016082 -
Eupl07g01379 246 Gene3D - 87 191 IPR036919 -
Eupl07g01379 246 Gene3D - 192 246 IPR036919 -
Eupl07g01379 246 NCBIfam 60S ribosomal protein uL30 13 246 IPR005998 GO:0000463|GO:0003735|GO:0022625
Eupl07g01379 246 SUPERFAMILY Ribosomal protein L30p/L7e 87 246 IPR036919 -
Eupl07g01379 246 Pfam Ribosomal L30 N-terminal domain 12 82 IPR012988 -
Eupl07g01379 246 CDD Ribosomal_L7_archeal_euk 87 246 IPR035808 -
Eupl07g01379 246 FunFam 60S ribosomal protein L7 192 246 - -
Eupl07g01379 246 PANTHER 60S RIBOSOMAL PROTEIN L7 10 246 IPR039699 -
Eupl07g01379 246 Coils Coil 52 76 - -
Eupl07g01379 246 FunFam 60S ribosomal protein L7 87 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01379 Eupl-Chr7 34835804 34842702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01379 3 246 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 83.607 1.90e-153 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01379 K02937 - nnu:104606157 452.981