LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl07g01370	ATGGTCGAGACAAGGCGAAGTTCAGCTTCATCGAAGCGTTCTCTTCCATCTCCAGACGCGTCTCCTCTCCCGAACGGCAAACGATCCAAGGCTTCGGAGGCATCACCATCGACAAATGAGGTTACTTCTGCTTCGCCACTGGAAACCTTAAAGGAACCTGGTTCTGAATCTCGAGAGCAGGATATTCGTCCTTCTGATCCGTCGGTCGTCGATCCATCGAAGGTGTCCGATGGCTGCAATTTAACGTTGGTGGAGAAATCTCCAGATGCTGATGGGGAAGGCGAGGCTTTGGCGTCTCCGTCGTCTTTAGGTGGTTCTGCTGTGGAGGGGGAGAAATCGCTGAAATCAGTTGGTGTGGCATCGAATGGGGCGCCGAAACGGCCAGTGAAAGCTCGTGCAAAGACTGCATGGGGAAAGCTTATATCTCAGTGCTCTCAGAACCCTCACCTGCACATCTGTGCTTCTCCTTTCACTGTTGGTCAAAGTCGACAAAGCAACTTATGTTTGAAAGATCCATCTGTCAGTTCAACTTTGTGTAGACTGAGGCATATAGAGCGAGGAGGTTCATCTGTTGCCCTACTAGAAATATCAGGAGGCAAAGGTGTTGTCCAAGTAAATGGCAAGATTTATGAGAAAAATTCCAATATAATTCTCAGTGGAGGGGATGAGGTCATTTTCAATTTGTCTGGTAAACATGCTTATATTTTCCAGCAACTCACAAATGAAAACTTGACTACTCCAGCTGCGCCTTCTACAGTTAGCATTTCAGGAGCCCAGAGTGCTCCTATTAAAGGAATACACATGGAGCCGAGGTCTGGAGACCCCTCGGCTGTTGCAGGTGCATCAATATTAGCATCTCTATCAAATTTTAGGAAAGATTTGTCGCTTCTTCCACCACCTGCTCAAAATGCTGAGGATGCACAACAAGGTTTAGAAAGGCCTACACTACCTTCTGGTTGTGAAGTGTCAGAGGCCCACATTCCAGACCTTGATACCAATTCCCATATTAGGAAGGATAGTTCTGAACGTAACGAGGTTGCTGGTGTTTCTTCAAGTGAGAAAGCTGCTGTACAATCTGCTGACATTGCTGCCAATGAAACCTTGCATCTTGAGAGCATTGGCTTGGATGCTCGTCTTGACACAGAAATTGGGAAGATTCCTGGGACTAACTATGAATTAAGGCCGCTTTTGCGGATGCTGGCAGGATCATCTACTTCTGACTTTGATTTAAGTGGAAGCATTTTCAAAACACTTGAGGAGCAAAGGGACATTAAGGAACTTCTCAAGGATTTTGATCCACAAATAATTTTGTCCTCAACTAGATGCCAAGCATTTAAGGATAGATTGCAACAAGGAATTCTCAGTCCTAGCGATGTCGAAGTCTCCTTTGATAATTTTCCATACTACCTAAGCGAGACCACAAAGAATGTTTTAATTGCATCTACGTATATACATTTGAAGCGTCATAAATTTGCGAAATACACTTCAGAACTCCCTACCATAAGCCCTCGAATATTGTTATCTGGTCCTGCAGGTTCTGAAATATATCAGGAGACCTTGACAAAGGCACTGGCCAAACATTTTGGTGCTAGATTTCTTATGGTTGACTCTCTCCTGTTGCCTGGTGTATTGCCTCCAAAGGATTCTGAATCCAACAAAGAAAGTTCAAGGTCAGAAAAATCAGGCACGTTTACTAAGCAACGAGCTGCACAGGCTGATACTTTACAACTCAAGAAACCAGCATCTAGTGTTGAGGCTGATATTATTGGTGCATCATCATTTAGCTCCCAAGCTCTGCCAAAGCAGGAGGCATCAACTGCATCATCCAAGAACTACATATTTAAAACAGGCGATAGAGTGAGATATGTGGGTTCTCTACATTCTTCTGGATTTCCTCCTCTTCAACCTCCTTCTAGGGGACCAACTTATGGTTATCGAGGCAAAGTACTCCTTGCTTTTGAGGAAAATGGATCCTCTAAAGTTGGAGTTAGATTTGACACAGCAATCCCAGAAGGTAACGATCTTGGTGGCCTTTGCGAAGAAGATCATGGTTTCTTTTGCCCTGCTGATTTGCTTCGTTTAGAAAATTCTGGAGGTGATGATGTTGACAAACTTGCCATCAATGAACTGTTTGAGGTTGCTTCCAGTGAAAGTAAAAATGGTCCCCTGATATTGTTTATGAAAGACATAGAGAAGTCTTTGGTAGGCAACCTGGAGGCATATTCAACTATTAAGAGTAAGCTTGAAAATCTGCCTGAGAATGTAGTTATAATTGGCTCACATACCCAGATGGACAACCGTAAGGAGAAGTCACATCCTGGTGGTCTTCTGTTTACAAAGTTCGGATGCAACCAAACTGCTCTACTTGATTTTGCTTTTCCGGATAACTTTGGTAGGCTACATGAGAGAAGCAAAGAAATCTCAAAGACATTGAAACAACTCATTCGACTTTTTCCAAATAAAGTGGCCATACAGCTACCACAGGATGAAACTCTACTTTCAGATTGGAAACAACAGTTGGATCGTGATGTTGAAACTCTCAAAACAAAGTCAAATATTGTTAGCATTCGCTCAGTTCTAAACCGAAATGGACTGGAGTGCCCTGACCTAGAAACACTATGCATAAAAGATCAAGCCCTTACAAGTGAAAGTGTGGAGAAGATAGTTGGTTGGGCTTTAAGTTATCATCTTATGCATAATACTGAAGCTTCTGTCAAAGATGCTAAGCTTGTGGTTTCCAGTGAAAGCATTTATTATGGGCTCAACATTCTACAGGGCATCCAAAATGAGTCTAAGAGTTTGAAGAAATCACTGAAGGATGTGGTCACAGAGAATGAATTTGAGAAGAGACTTCTGGCTGATGTCATTCCACCAAATGATATTGGAGTTACTTTTGATGACATTGGAGCTTTAGAAAATGTGAAGGACACATTAAAGGAATTGGTGATGCTTCCTTTGCAAAGGCCAGAATTGTTTTGCAAAGGGCAACTGACAAAGCCTTGCAAGGGAATACTGCTCTTTGGACCTCCTGGTACAGGGAAAACAATGCTAGCAAAAGCTGTTGCAACTGAGGCAGGTGCAAACTTTATCAACATATCAATGTCGAGCATTTCTTCAAAGTGGTTTGGCGAAGGAGAAAAGTATGTCAAAGCAGTGTTCTCACTAGCAAGTAAAATTGCTCCTAGTGTTGTTTTTGTTGACGAGGTTGACAGCATGTTGGGAAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAAATGAAAAATGAGTTCATGGTAAACTGGGATGGCCTGCGTACAAAGGATAAAGAACGTGTATTGGTACTTGCTGCCACTAATAGGCCTTTTGACCTTGATGAGGCTGTTATAAGGAGGCTACCCAGGAGATTAATGGTAAACTTGCCAGATGCCACAAACAGAGAAAAAATTCTCAGAGTTATACTGTCCAAAGAAGAGGTGGCACCTGATGTTGAATTGGAAGCAGTTGCAAATATGACTGATGGATATTCTGGAAGTGACTTAAAGAATCTTTGTGTTACCGCCGCACACTGTACCATAAGAGAAATTCTAGAGAAGGAAAAGAAGGAAAAAAGTTTAGCATTAGCAGAGAACAGACCGTTGCCTGCATTGCATGGAAGTGCTGACGTTCGTCCTCTAAACATGGAGGATTTGAGATATGCACATGAGCAGGTATGTGCAAGTGTGTCATCAGAGTCTTCGAATATGAATGAGCTCCTCCAATGGAATGAGCTATATGGAGAAGGTGGATCAAGGAAGAAGAAATCACTCAGCTACTTCATGTAG	3807	0.4282	MVETRRSSASSKRSLPSPDASPLPNGKRSKASEASPSTNEVTSASPLETLKEPGSESREQDIRPSDPSVVDPSKVSDGCNLTLVEKSPDADGEGEALASPSSLGGSAVEGEKSLKSVGVASNGAPKRPVKARAKTAWGKLISQCSQNPHLHICASPFTVGQSRQSNLCLKDPSVSSTLCRLRHIERGGSSVALLEISGGKGVVQVNGKIYEKNSNIILSGGDEVIFNLSGKHAYIFQQLTNENLTTPAAPSTVSISGAQSAPIKGIHMEPRSGDPSAVAGASILASLSNFRKDLSLLPPPAQNAEDAQQGLERPTLPSGCEVSEAHIPDLDTNSHIRKDSSERNEVAGVSSSEKAAVQSADIAANETLHLESIGLDARLDTEIGKIPGTNYELRPLLRMLAGSSTSDFDLSGSIFKTLEEQRDIKELLKDFDPQIILSSTRCQAFKDRLQQGILSPSDVEVSFDNFPYYLSETTKNVLIASTYIHLKRHKFAKYTSELPTISPRILLSGPAGSEIYQETLTKALAKHFGARFLMVDSLLLPGVLPPKDSESNKESSRSEKSGTFTKQRAAQADTLQLKKPASSVEADIIGASSFSSQALPKQEASTASSKNYIFKTGDRVRYVGSLHSSGFPPLQPPSRGPTYGYRGKVLLAFEENGSSKVGVRFDTAIPEGNDLGGLCEEDHGFFCPADLLRLENSGGDDVDKLAINELFEVASSESKNGPLILFMKDIEKSLVGNLEAYSTIKSKLENLPENVVIIGSHTQMDNRKEKSHPGGLLFTKFGCNQTALLDFAFPDNFGRLHERSKEISKTLKQLIRLFPNKVAIQLPQDETLLSDWKQQLDRDVETLKTKSNIVSIRSVLNRNGLECPDLETLCIKDQALTSESVEKIVGWALSYHLMHNTEASVKDAKLVVSSESIYYGLNILQGIQNESKSLKKSLKDVVTENEFEKRLLADVIPPNDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSISSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDATNREKILRVILSKEEVAPDVELEAVANMTDGYSGSDLKNLCVTAAHCTIREILEKEKKEKSLALAENRPLPALHGSADVRPLNMEDLRYAHEQVCASVSSESSNMNELLQWNELYGEGGSRKKKSLSYFM*	1269

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl07g01370	1268	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	963	1242	IPR027417	-
	Eupl07g01370	1268	Gene3D	-	136	246	-	-
	Eupl07g01370	1268	Pfam	ATPase family associated with various cellular activities (AAA)	1004	1133	IPR003959	GO:0005524\|GO:0016887
	Eupl07g01370	1268	MobiDBLite	consensus disorder prediction	545	569	-	-
	Eupl07g01370	1268	Gene3D	-	1136	1230	-	-
	Eupl07g01370	1268	MobiDBLite	consensus disorder prediction	296	352	-	-
	Eupl07g01370	1268	Gene3D	-	962	1241	IPR027417	-
	Eupl07g01370	1268	MobiDBLite	consensus disorder prediction	328	344	-	-
	Eupl07g01370	1268	SUPERFAMILY	SMAD/FHA domain	137	229	IPR008984	GO:0005515
	Eupl07g01370	1268	SMART	AAA_5	1000	1137	IPR003593	GO:0016887
	Eupl07g01370	1268	ProSitePatterns	AAA-protein family signature.	1107	1126	IPR003960	GO:0005524\|GO:0016887
	Eupl07g01370	1268	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	443	1267	-	-
	Eupl07g01370	1268	MobiDBLite	consensus disorder prediction	28	50	-	-
	Eupl07g01370	1268	MobiDBLite	consensus disorder prediction	1	109	-	-
	Eupl07g01370	1268	MobiDBLite	consensus disorder prediction	1	18	-	-
	Eupl07g01370	1268	Pfam	AAA+ lid domain	1157	1193	IPR041569	-
	Eupl07g01370	1268	FunFam	p-loop nucleoside triphosphate hydrolase superfamily protein	962	1138	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl07g01370	Eupl-Chr7	34662625	34688667	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl07g01370	999	1204	Calmodulin-binding Proteins	AT3G56690	37.321	7.02e-33	136

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl07g01370	-		-	nnu:104606152	1826.6