Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01345 ATGGAGGGGAACAATGTATCTTCTGACCATGTCATTGCGGAACTGATTGAAATGGGATTCGAATTCTCTGTAGTTATAGAAGCAATAGAAGCAGTGGGTCCATCGCTTGACGATGCAGTTGATTTCATTTTGAACACTTCTCATAGAAAAAATATGGGTTCATCAAGTGTTTCAATCAGTAATGCATGCACTTCGGGCAAAAGGGTTATGGGTTGGATGAAACAGTCTAGCATCATGGAACATCTCCAATCATCAAGTAGACCCAAAAGAAGCAGGACTCATGGTACATCCGATGCATCAATTTCTGTCTCAGAGATGGTGTCTAGGCCTGTGGTAGAGCAGAATGTGTCTCTTCATTATATAGATCATAATCTGGAATCCGCACCCGAGTCGTCCATACTGCCAGTTTATGGCCCAAAAGACCAAGAAATAGGATCAGATTGGGAACAGAAAGTCAATACTCTCTTACGCAAGCATTTTGGATTTTCATCCGTGAAGAGTTTCCAAAAGGAAGCCCTGGAGGCTTGGTTAGCTAATCAAGATTGCCTTGTTCTTGCTGCAACAGGATCAGGGAAATCGCTCTGTTTTCAGATTCCTGCATTATTGACAGGCAAGGTTGTGGTTGTGATTTCACCCTTGATAAGCTTGATGCATGATCAGTGCTTAAAGCTAGCAAAACATGGGGTATCGGCTTGTTTCCTTGGATCAGGACAAACTGACAGCAGTGTGGAACACAAAGCAATGAATGGCATGTATGGGGTGATTTATGTTTGCCCAGAGACAGTATTGAGACTCATGGGACCACTTGAGAGGCTTGCACAGAATCGTGGAATTGCACTTTTTGCCATTGATGAAGTCCACTGCGTCTCTAAGTGGGGCCATGATTTTCGACCTGCCTACAGGCGATTGTCTATATTGAGAGAAAACTTCAGGGCCTGCAATTTAAATTTCTTAAAGTTCGATATCCCACTGATGGCATTGACTGCTACTGCTACAATTCGAGTTCGAGAAGACATTCTTAAGTCGCTGTGCATGTCGAAGGAAACAAAGATTGTGCTCACTTCATTCTTCCGACCAAATCTTCGGTTTTCAGTGAAACATAGTAGAACATCTTCTATGTTATCATATGAGAAGGACTTCCGTGAATTGATAGGTTCTTACACTACAAAGAGTGTGGTTGGTAGAAAGGAACATAAAGCCATCTCGCATGGTTCAGAGGATGAGTCTGACTACTCCAGATCTGCAAAGGGTTACATATCTGATGCAGATGAAATATCTGCAAGTGATTTGGAGAACTTTGAAGACGACTACTTTGATGGGAATGGTGCTGCAGTAAGTTCAGTAAATGGGAACGGTCTAGCTGCTTCTAAGGAAAACCAAATGTCGGTTGAATTTCTGGAAGATGAGTTAGACGTCTTTCAGAATGTGGATGATTTGGATGTTGCCTGTGGTGAGTTCTGTGGGCATTTTCCTACTGAGAATGGGGATATATGTGGGTCATCTGAGACAATTGATCCGCCAATCAAACCGGAAGAAAAACAGAAACTTCTAAAAGGGCCTTTAGAGCAAGGACCGACTATTATTTATGTGCCTACTAGAAAAGAAACATTAAAACTATCAAAGTATCTTTGTAAATTTGGGGTAAAGGCTGCTGCATATAATGCTAAGTTGCCAAAAACGCATCTGAGGCAGGTCCACAAGGAGTTCCATCAGAATGTTTTAGAGGTCATTGTCGCAACAATTGCTTTTGGGATGGGGATTGACAAATCAAACGTCCGGAGAATCATTCATTATGGTTGGCCACAGAGCTTGGAAGCATATTACCAAGAAGCAGGTAGAGCTGGAAGGGATGGGAAATTAGCAGATTGCATTCTGTATGCAAACCTATCAAGAATACCTACACTTTTGCCAAGTCACAGAAGTGAAGAACAAACAAAACAAGCATATAAAATGTTATCTGATTGCTTCAGGTATGGTATGGGTACTGCATGTTGTAGAGCTAAGACACTTGTGGAGTACTTTGGGGAAGATTTTAGTTACAAGAAGTGTCTCTTGTGTGATGTCTGTGTGGTTGGGCCTCCTGAATTGCAGAATCTGAAGGAGGAGGCAGATATTTTCATTCGGGTACTTGCAGCTCAGTATGCGCAGACCAGTTACGGAGATGGCTCTTATGATAATGCAATGTGTAGTGGAGTTAAAAGAGGGAGAGATATAGAGAAGCCAAACTTGAGGATGGTGATCAGTGGAATAAGGGAACAGTTCCCAAAATTTGCAGCAAGTGATCAACTATGGTGGCAAGGTCTTGCTCGTGTATTAGAAGATAAGGGGTACATAAGGGAGGCGGGTGACATGACCCGGGTTTGTATAAAATTTCCAGAGCCTACAGACTTGGGACTCAGGTTTCTGCAGTCTGCGACAGAGCAAACTTTATATGTTTACCCTGAAGCAGACATGCTGCTTTCAGTGAAAAACCGCAAATCTTATTCCACCTTCTCAGAATGGGGCAAAGGTTGGGCTGATCCCGAGATTCGTCGCCAACGCCTTCAGGGGAAGAAGTGTAGAAGAAAGACACGGAGGAAACGCTCAAGCCAAGATCACCAGGATCCGAGAACAGTTCGAGGAAGGTTAGCGGCAAAACTTTCGAAACAAAAGCGCTAA 2658 0.43 MEGNNVSSDHVIAELIEMGFEFSVVIEAIEAVGPSLDDAVDFILNTSHRKNMGSSSVSISNACTSGKRVMGWMKQSSIMEHLQSSSRPKRSRTHGTSDASISVSEMVSRPVVEQNVSLHYIDHNLESAPESSILPVYGPKDQEIGSDWEQKVNTLLRKHFGFSSVKSFQKEALEAWLANQDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLAKHGVSACFLGSGQTDSSVEHKAMNGMYGVIYVCPETVLRLMGPLERLAQNRGIALFAIDEVHCVSKWGHDFRPAYRRLSILRENFRACNLNFLKFDIPLMALTATATIRVREDILKSLCMSKETKIVLTSFFRPNLRFSVKHSRTSSMLSYEKDFRELIGSYTTKSVVGRKEHKAISHGSEDESDYSRSAKGYISDADEISASDLENFEDDYFDGNGAAVSSVNGNGLAASKENQMSVEFLEDELDVFQNVDDLDVACGEFCGHFPTENGDICGSSETIDPPIKPEEKQKLLKGPLEQGPTIIYVPTRKETLKLSKYLCKFGVKAAAYNAKLPKTHLRQVHKEFHQNVLEVIVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLSRIPTLLPSHRSEEQTKQAYKMLSDCFRYGMGTACCRAKTLVEYFGEDFSYKKCLLCDVCVVGPPELQNLKEEADIFIRVLAAQYAQTSYGDGSYDNAMCSGVKRGRDIEKPNLRMVISGIREQFPKFAASDQLWWQGLARVLEDKGYIREAGDMTRVCIKFPEPTDLGLRFLQSATEQTLYVYPEADMLLSVKNRKSYSTFSEWGKGWADPEIRRQRLQGKKCRRKTRRKRSSQDHQDPRTVRGRLAAKLSKQKR* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01345 885 Pfam Helicase conserved C-terminal domain 515 617 IPR001650 -
Eupl07g01345 885 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 511 671 IPR001650 -
Eupl07g01345 885 Pfam DEAD/DEAH box helicase 168 334 IPR011545 GO:0003676|GO:0005524
Eupl07g01345 885 SMART ultradead3 161 366 IPR014001 -
Eupl07g01345 885 SMART helicmild6 537 618 IPR001650 -
Eupl07g01345 885 Gene3D - 507 627 IPR027417 -
Eupl07g01345 885 FunFam ATP-dependent DNA helicase 629 807 - -
Eupl07g01345 885 FunFam ATP-dependent DNA helicase 137 357 - -
Eupl07g01345 885 Gene3D - 137 357 IPR027417 -
Eupl07g01345 885 NCBIfam RecQ family ATP-dependent DNA helicase 155 373 IPR004589 GO:0004386|GO:0006310
Eupl07g01345 885 PANTHER DNA HELICASE RECQ FAMILY MEMBER 141 783 - -
Eupl07g01345 885 Pfam RecQ zinc-binding 634 689 IPR032284 -
Eupl07g01345 885 MobiDBLite consensus disorder prediction 847 885 - -
Eupl07g01345 885 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 629 IPR027417 -
Eupl07g01345 885 SUPERFAMILY UBA-like 8 48 IPR009060 GO:0005515
Eupl07g01345 885 Gene3D - 2 52 - -
Eupl07g01345 885 MobiDBLite consensus disorder prediction 80 101 - -
Eupl07g01345 885 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Eupl07g01345 885 FunFam ATP-dependent DNA helicase 500 627 - -
Eupl07g01345 885 CDD DEXHc_RecQ 156 356 - -
Eupl07g01345 885 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 349 IPR014001 -
Eupl07g01345 885 Gene3D - 630 812 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01345 Eupl-Chr7 34367405 34382710 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01345 511 618 Eukaryotic Initiation Factors Gene Family AT5G11170 28.182 4.10e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01345 K10900 - ming:122090919 1245.34