Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01310 ATGGATTTGTACGGTAGGAGTCCCGCAATGGAAGGGTCTCAATCGGATCCGGCGGTTGGATGGAACTCACCGGTGATCGAAACCGGACTCGAAGAACCGTTGTGGCAGTTGGGATTGGGCAGTAGGGATTCGTACCCGGAGCGGCCTGGCGAGCCCAACTGTCCCTATTATATGCGCACTGGGTCCTGCGGCTACGGTTCCAGGTGTCGCTTCAATCACCCTCCTGATCGCAGTATGGCTGCGGGAGCTGTAAGGCAAGGAGGAGGGGAGTATCCAGAGCGGGAGGACCAACCTGTATGCCAGTATTTTTTGAAGACTGGGACTTGCAAATTTGGTGCTTCCTGCAAGTTTCACCATCCAAAATACGGAGGTGGATCGATGAGCCCAGTGTCATTAAATTATCTTGGATACCCACTTCGACCGGGCGAGAAAGAATGCTCCTACTACGTGAAAACTGGGCAGTGCAAGTTCGGTGTTACCTGTAAATTCCATCATCCACAACCAGCCGGTGCATCACCGGCTCCTGCACCTACATTTTATCCAACGGTGCAGTCTCCTTCGGTTCCTTCCCCTCAACAATATGGAGTGGGTGCTAGCTGGCAAGTAGCAAGGCCTTCGCTGTTACCTGGGTCATATGTGCAAGGTGCTTATAGTCATGTGCTGCTTCCCTCAGGGATGGTTCCCATTTCTGGTTGGAGCCCTTACCCGGCACCTGTAAGCCCAGTGGCTTCTCCTGGTACTCAACCCACTGTTGGAGCAGGCCCAGTTTATGGAGTAACACAGCTATCTCCTTCAGCGTCAGCATATGCAGGACCTTATTCGCCCCTTCCTTCCTCTGCTGGCCCTTCAAGCAGTAGTCAGAAGGAACACATGTTTCCAGAAAGACCCGGCCAGCCCGAATGCCGGTACTACATGAGAACGGGGGATTGTAAATTTGGATCCACTTGTAGATTCCATCATCCCCCGGAATGGATCACGCCGGAAACAATTTGTGTCCTCAGCCCCATGGGTCTCCCTCTGCGTCCGGGTGCCCCAACTTGCACTTTCTATGTGCATCATGGAGTATGCAAGTATGGGCCGACATGCAAATTCGATCATCCAATGGTGACAATGAGTAATAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTTGCTCCCTACCCTGTTGGCTCTTCACTGGCTACCTTGGCTCCATCATCCTCTTCTTCGGAGTTGCGGCCTGGATTCATCGCAGGCTCCAACAGGGATTCTTTCTCAACCAGGATGCCATCTTCTGAGAGCACGTCCAGTGGTTTGGTTGGTTCAATTTTCTCAAGGAGTAGGTCTGTTCCTAATTCGAGTGTTCCACTCTCCAGTCAGAGTTCTGCCCCTTCAAGTGGTAGCAGTAGCATAGGTCATGGCGGTGAAGTTCATATTTCTAGCTGA 1428 0.5217 MDLYGRSPAMEGSQSDPAVGWNSPVIETGLEEPLWQLGLGSRDSYPERPGEPNCPYYMRTGSCGYGSRCRFNHPPDRSMAAGAVRQGGGEYPEREDQPVCQYFLKTGTCKFGASCKFHHPKYGGGSMSPVSLNYLGYPLRPGEKECSYYVKTGQCKFGVTCKFHHPQPAGASPAPAPTFYPTVQSPSVPSPQQYGVGASWQVARPSLLPGSYVQGAYSHVLLPSGMVPISGWSPYPAPVSPVASPGTQPTVGAGPVYGVTQLSPSASAYAGPYSPLPSSAGPSSSSQKEHMFPERPGQPECRYYMRTGDCKFGSTCRFHHPPEWITPETICVLSPMGLPLRPGAPTCTFYVHHGVCKYGPTCKFDHPMVTMSNSPSASSLADMPVAPYPVGSSLATLAPSSSSSELRPGFIAGSNRDSFSTRMPSSESTSSGLVGSIFSRSRSVPNSSVPLSSQSSAPSSGSSSIGHGGEVHISS* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01310 475 PANTHER PROTEIN PHOSPHATASE RELATED 40 403 - -
Eupl07g01310 475 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Eupl07g01310 475 SUPERFAMILY CCCH zinc finger 53 76 IPR036855 GO:0046872
Eupl07g01310 475 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Eupl07g01310 475 SMART c3hfinal6 295 322 IPR000571 GO:0046872
Eupl07g01310 475 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Eupl07g01310 475 SMART c3hfinal6 341 368 IPR000571 GO:0046872
Eupl07g01310 475 SMART c3hfinal6 94 121 IPR000571 GO:0046872
Eupl07g01310 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 297 322 IPR000571 GO:0046872
Eupl07g01310 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 345 368 IPR000571 GO:0046872
Eupl07g01310 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Eupl07g01310 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 121 IPR000571 GO:0046872
Eupl07g01310 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 167 IPR000571 GO:0046872
Eupl07g01310 475 Gene3D - 89 175 - -
Eupl07g01310 475 Gene3D - 293 379 - -
Eupl07g01310 475 Gene3D - 42 87 - -
Eupl07g01310 475 MobiDBLite consensus disorder prediction 277 291 - -
Eupl07g01310 475 ProSiteProfiles Zinc finger C3H1-type profile. 341 369 IPR000571 GO:0046872
Eupl07g01310 475 ProSiteProfiles Zinc finger C3H1-type profile. 295 323 IPR000571 GO:0046872
Eupl07g01310 475 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
Eupl07g01310 475 MobiDBLite consensus disorder prediction 414 475 - -
Eupl07g01310 475 MobiDBLite consensus disorder prediction 273 295 - -
Eupl07g01310 475 ProSiteProfiles Zinc finger C3H1-type profile. 94 122 IPR000571 GO:0046872
Eupl07g01310 475 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Eupl07g01310 475 MobiDBLite consensus disorder prediction 1 23 - -
Eupl07g01310 475 SUPERFAMILY CCCH zinc finger 345 368 IPR036855 GO:0046872
Eupl07g01310 475 SUPERFAMILY CCCH zinc finger 299 323 IPR036855 GO:0046872
Eupl07g01310 475 SUPERFAMILY CCCH zinc finger 142 168 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01310 Eupl-Chr7 33820666 33834249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01310 1 433 C2H2 Transcription Factor Family AT5G18550 55.507 6.59e-154 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl07g01310 zf-CCCH 1.4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01310 - - nnu:104587576 674.47