Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01305 ATGGCGAACTCGCAGTCAGATTCAAACATGTTCAGCGTTCGAATTGTTTCGATCGACTATTACATGGCGCCTCCCGTCAAAGATCTCGATATCTGTTACAGTAGTTTTCAAGGTGGGATGGTGAACGAGGTGCCGGTCATAAGGATTTACGGTTCTACTCCTGCTGGTCAGAAGACTTGCTTGCATGTTCATCGGGCTTTACCATATCTATATGTGCCATGTTCCGATATCTCACTGCAAACACCCGAACAAGGTGATGCGTACACACGTGTTGTATCTCGTGCGATAGAGAAGAGTTTGAAGCTTAAAGGTTGTGGTGGATCAAAAAGACAACACGTGCATGGTTGCAGCCTTGTGCGAGCGAGAAAGTTTTATGGTTACCATACGTCGGAGGAGCTATTTGTAAAAATATACTTATATTATCCTCATGAAGTTGCTCGTGTTGCTACTCTCCTTCTGGGTGGTGCAGTCTTAGATAAAAGTTTCCAGCCTCATGAGTCGCACATTCCTTATCTTCTCCAGTTTTTGGTTGACTATAACTTGTGTGGAATGGGCCATCTGCATCTATCAAAGGTGAAGTTCCGCCATCCATTACCTGACAATTTCATCCCAAGAGCAGCTCATTACAGTGGCCAATGTAGTCATGCCACTGTGAAGTTCAGTTGCATTTCTGCCAATGTTCAGGCAGATTCAAGTACTGATGCATATCTAGGTTCACCAATTTGGATATCTAGCACGATCCCTAGGGGTTGGATGTGGCCATTTCCTATTCAGCACGATGGTTCACTAGATCAGGACCTTCACCTCATTAAACGTCAAAGTACTTGTGAGCTTGAGGGAGATGCTACTGTGGATGAGATTCTAAACCAGCATTTTAAAATTTACACATCTCTTTCTCAGACTCGATCTGAGGTGAAAATGGTTCAGTCACTAGTACCAATTTGGGAGGAGGAGTATGAAAGAACGGGGATGCATGACTCAGTGATATCTCCTGACCCTAGCAAACCACACCCTGAAAATGTTCTGAAAACTCTCTCATGTGGACATGAATTTGAGAATGCGCTCTTGGAATTGTGCAGGGAAGCAGAAGAGTCATCATCTTCTCAAGTTACTCCTTTGGAGGAGGCTGAAAAGTTTATGCAGTCCATAAGATCTTTAACCGATGTGGGCAACTTGGTTGAATTCAGGGAACATGTGAACTGCAAGTGTCCTAATGAAGAATTTTCGAAGTGTTCTGAAGAAGGAAATAGAAATGGATCTGTGTCATCACGAGGATCATTATCCAAACAGGATGATGGTGCAATACCTTCTGAATGGAGGCATGGATTTCCAGAACTAGTACCAGTTGATGAGGAAATGCTAACATCTGAAATGACTGAAACCATAGATCCTAAGGTTATAGATATGGAGGCTCTGGGGCTTCTGAGGTGGCTTGCCTCTTCTCAATCTGCAGAGGATTTAAACACTGATGATGAACTTGTTCATGCATCGATTCTGAGTCCTTTGTTGCCTACGACTGCAATTGATGAAGTCTTGGAGAAAGCTAATTTTGATTATGAGAATGAATCCCAACAAGAATGTCAAGACATTCTTGATTCAGTTGAGGATATAACTAATTTTGAGGTTTTAAAGGAACAAACTGATTTACCCCAAAGATCATCACATAATATGATTCCTCAAGTGGATGGTTTGTGTGACGATCAATTCAGTACTCCTGTTGGTAATTCATCCGAAGTAGAGATGGACTGTGAATTGGAGAGGTCTGTTTCACACCAGGTACTGCAAGACACTGGCATAGACCTCAGCAGTGAGCAGAAAAGGAACCAAAGGTTATGGGGATCTTTACCCGTTTCCACGCAACAAAAGATGAATGAAGATTTAGAGTCTGCCAGTTTCAACTTTGATGATATATGCAATGAGATGAAAAGTAGCATTCATTCCAGTGATTCTGGAAACAAAGTGGACAAATATTGCGATGCTTCAACGACTGATGCAGACTCAAATACCCGCGGTTTAAAAGGAGGAAATAAATTGACTGGATGTTCCATGAGGGACTTGATGAGGAGAAAGCGATGCTACCGGGTTGAGCCATCTGAACGTGGGACTTCTAGAGTTAAGAAGATTCTTTTGGGGAAGGAACAGAAAGAGGAAACATCTCTCAGTCCAAAGCAGCTAGAGTTTCATATCTTGCAGGATGGTAGGAACGCAGCAATGCCCAGTGAAACTCCTGTGAAGCCATCGGTTACTGGCCCTCGAGCAATGGTTCATGAGATAAGCTCACGTACGGCAGCTTGTACATCGGAGGTATGTTCTGAGGCTAATGGAGTAAGACCTGCATACAGGAGACTACCTTTTTTGTCCTGCAACGATAGCTCATTGCAAGCCAGCACATTAAGAAAAGATCATTTCAGTTTGCATGAAAGATCAGATGATATTGAACACATCAGAGCTGCTGCTAATTCTGAAAGCTGCACGATGACACGTCTTTCGCTGTTACATACTGAAACAAGGGAAGTACCAGAATATCTTAACTCAGAGAAGCAAGACACTGCAGTGTCTACAGGCTTTTGTGAATGTTGTAAAGTTATAGGAGAGTCTGATTTCTGTTCAAGTTGCTCGAAGCTTGCAACTTCCGATGCCTACAGTCACAAACCTGATTTATTCGTCACTGATCAGTTGATATTTGATACAGATGATAACCCGTGTGTTAATAAGGGACTGGAGCAAAAGCCAAATTTTGATTCAAAATGTTTGATATCTTCTTTTGACAAAAAAGGTCAGGAGGGTAGTAGTAGCACTTCCATGGAAAGGTTACCTGGAATGTGTTCTGGTCATGGAAATACAAATGCTGAAACTGATGTGAATGTATTGCAAATTGACAAGTGTGTCTGTGCAGAACAGGACATGCAAACCTGTTTGCTCAGGCCTGATGGTTCATTATCCACAGTGGTCCACTCTGAAAGGAGGCCTGTGGACTATGTTGAGATGACCTTTAGTAAGAAACCCCCCACTATAGACTGGATGAAGAGGATATCTGATGATGCTTCATTTGCAGATGCTTCGTTTGCAACTGGTTTGCATAATTGCACTTTTACCTTGGACATGGACAATCATGAAGGAACATCGTGTTGCAACTCCAATTTACTAGATCTTGAAGGGAGAGATGCAGATGAAATTCTCCCCTTTTTTGCAGACAAATGTCAAGAAGAGAAAGAAGTTCACTACAAGTCTTACAAAAATAAAGAAGTTCATAATTTTCATAAAGAAACGGTTTTAGGTGTCCCTACTCACTATCAGAATGATGGTTCCTTTTTATACTTACTGACAACTGCATATTCACCACCATCTGTGGCTTGTGTTCATAAATGGCTATTGCATCTGGCACCTCGAAATACTACAGATGCCTCAGGTACCTCAAGAGACAACTTTCGTTCAGCATTGCTGGAGCCTTCTTCTCTGAAACATAACAGTAGTGTAGGTTTTGTAAATGAGGAGAATAATTCTTGGAATAAAGGGAAGACATCACCTGAGCCCCCAAAACTGAACGCGGCTTCATGTAGGAATATGATTAATTCTCAAGGGTCTCCATCCGATGCTTGTCATGGGACTTTACCTGAATCTGGTTCTGTACCTCATGCGAAGCCTTGTCTGGATCAATTGAGTCTAAAAAATCATGAAAACCTCAAGACACAAATTAATCTTTGCCATACTGAGGTGACAACGGAACCCCACAGTGGAGGAACTAATGTGAAAGAAAAAGAACGCACTGAAAGCTGGCAAGATGTCTCTCAGATTTCAGGCCCAGATGCGAGATCAAAGCTTACCCCTCTTAGTCAAATTGGATTTCGTGATCCTGCTAGTGTTGGTGCTGGCCAACAGCTAACATTGCTGAGTATAGAGGTTCAAGCAGAATCAAGAGGAGATCTTCGACCTGATCCCCGATTTGATGCAATCAATGTTATAGCTCTTGCTATTCAAGAGGATAATGATCACACTCTTGAAGTCTGTGTGCTTTTGCGTAGTAGTGATGGGGAATCATGTCAGAGAAATTTTGATGGGATTTCTGGTTGCAATGTGATAGTTTCCTCTGAGGAGAAGCACTTAATTAACCATTTTGTCAAGATTATTCGCTCGTTTGATCCAGATATTTTGATGGGTTGGGAAGTTCAGGGTGGTTCCCTTGGTTTTTTAGCTGAAAGGGCTGCACATCTTGGTATAGTTTTATTAAATAACATATCTCGGACACCTACATCTGAAACCAAAATTCCAGCTAGAAATTCAGCAACTCCTGAAAAAGGAATGCCAGATGATCTGAAACCTGAAGCCTTAATTGCTGATTCTGTTGTTCTTGAGGATGCAACAATTGAGGATGAATGGGGTCGCACTCATGCCAGTGGCATCCATGTTGGTGGAAGAATTGTGCTCAATATTTGGCGACTGATGCGTGGTGAGATTAAGCTTAATATGTACACAATTGAAGCTGTAGCTGAAGCAGTTCTGAGGCGAAAAATTCCATCAATTCCATCCAGAATATTGACACGATGGTTTTCAAGTGGTCCTGGACAAGCAAGATTCCGATGTATCGAATATTTCTTAGAGAGGGCAAAGCTGAACTTTGAGATAATGAATCAACTTGATATGATAAACCGAACGTCGGAGCTTGCTCGTGTTTTCGGTATCGATTTTTTTTCAGTTCTCTCTCGAGGTTCACAGTATCGTGTCGAATCTATGTTTCTGAGATTGGCACATACACAAAACTACCTCGCCATCTCTCCTGGGAACCAGCAGGTAGCTTCACAACCTGCAATGGAGTGCCTACCCCTTGTAATGGAGCCTGAATCTGGATTTTATGCAGATCCGGTTATTGTTTTGGATTTTCAATCTCTCTATCCATCAATGATAATTGCATACAACCTGTGCTTTTGTACGTGCCTCAGTAAGGTCTTGCCTTCAAAAGCAAATACACTTGGTGTCAGTTCGTTTTCACCAGATCCACAACTTCTGATGGATCTAAAACATCAAATATTGCTTACTCCAAATGGAGTTATGTATGTGCCCTCAAAGGTTCGAAAAGGTGTGCTACCCCGTTTGCTGGAGGAAATACTATCAACTAGAATCATGGTGAAACAAGCAATGAAAAAGTTGACGGCTTCACAACAAGTTTTACACAGGATATTTAATGCAAGACAGCTTGCTCTGAAGCTGATAGCTAATGTAACTTATGGATATACAGCTGCGGGCTATAGTGGCCGCATGCCTTGTGCAGAACTCGCAGACAGTATTGTCCAATGTGGTCGTAGAACTCTGGAACAGGCTATTTCATTTGTAAATGCACATGATAAGTGGAATGCCAGAGTTATTTATGGTGATACCGATAGCATGTTTGTCCTCCTTAAAGGACGCACAGTGAAAGAATCTTTCAGAATTGGACAGGAAATTGCATCAGCGATAACTTCGATGAATCCAAACCCAGTTGCATTGAAAATGGAGAAGGTCTATCACCCGTGTTTCCTCCTTACAAAGAAGCGTTATGTTGGTTACAGCTATGAGAGCCCTGAACAAGCTGAACCTTCATTTGATGCTAAAGGGATTGAGACAGTACGGAGAGATTCATGTGGGGCAGTCACAAAAACGTTGGAGCAATCATTAAGACTCTTCTTTGAACACCAGGACATCTCTAAGGTTAAAGTATATTTGCAGCGTCAGTGGACACGAATTATAAGTGACAGGGTTTCTGTTCAGGATTTTGTATTTGCAAAGGAGGTCCGCTTGGGTACGTACAGTTCTAGGGCTTCTTCACTTCCACCAGCAGCAATTGTGGCCACTAAAGCAATGAAAGCTGATCCTAGAGCAGAGCCACGTTATGCAGAGCGGATACCCTACGTCGTAATCCATGGGGAACCTGGGGCCCGCCTTATCGACATGGTTGTAGATCCATTGGATCTTTTGGCGCTTGATTCCCCTTTTAGATTAAACGATCTATATTACATTAACAAGCAGATAATCCCAGCACTGCAACGGGTGTTTGGCCTTGTTGGGGCCGACTTGAGCCAGTGGTTCTTGTTGATGCCCCGTCCTGTTAGGCTTGCTGTGACTAAAAGCCACACTTATGCACCAAATGCACGCAAAACCAGAATAGATTATTACTATCTCTCCAAACACTGTATCCTGTGTGGGGAGTTGGTCCAAGCATCAACCCATTTGTGTGACAAGTGCTCTAAAAAGGGTCCAGCCGTTGCAACTGCCGTGATTGGCAGAACCTCAAAATTAGAGAGGGACATCCAACACCTTGCCACCATATGCCGGCATTGTGGAGGTGGGGATTGGATTTTGGAAAGTGGGGTGAAGTGCACCTCACTTGCATGTACAGTGTTCTACGAGAGGCGGAAAGTCCAGAAAGAATTTCAGGCTCTCTCTGCTGTTGCAACGGAGGCCGGATTCTATCCGAGGTGCATGGTGGAGTGGTTCTGA 6471 0.4284 MANSQSDSNMFSVRIVSIDYYMAPPVKDLDICYSSFQGGMVNEVPVIRIYGSTPAGQKTCLHVHRALPYLYVPCSDISLQTPEQGDAYTRVVSRAIEKSLKLKGCGGSKRQHVHGCSLVRARKFYGYHTSEELFVKIYLYYPHEVARVATLLLGGAVLDKSFQPHESHIPYLLQFLVDYNLCGMGHLHLSKVKFRHPLPDNFIPRAAHYSGQCSHATVKFSCISANVQADSSTDAYLGSPIWISSTIPRGWMWPFPIQHDGSLDQDLHLIKRQSTCELEGDATVDEILNQHFKIYTSLSQTRSEVKMVQSLVPIWEEEYERTGMHDSVISPDPSKPHPENVLKTLSCGHEFENALLELCREAEESSSSQVTPLEEAEKFMQSIRSLTDVGNLVEFREHVNCKCPNEEFSKCSEEGNRNGSVSSRGSLSKQDDGAIPSEWRHGFPELVPVDEEMLTSEMTETIDPKVIDMEALGLLRWLASSQSAEDLNTDDELVHASILSPLLPTTAIDEVLEKANFDYENESQQECQDILDSVEDITNFEVLKEQTDLPQRSSHNMIPQVDGLCDDQFSTPVGNSSEVEMDCELERSVSHQVLQDTGIDLSSEQKRNQRLWGSLPVSTQQKMNEDLESASFNFDDICNEMKSSIHSSDSGNKVDKYCDASTTDADSNTRGLKGGNKLTGCSMRDLMRRKRCYRVEPSERGTSRVKKILLGKEQKEETSLSPKQLEFHILQDGRNAAMPSETPVKPSVTGPRAMVHEISSRTAACTSEVCSEANGVRPAYRRLPFLSCNDSSLQASTLRKDHFSLHERSDDIEHIRAAANSESCTMTRLSLLHTETREVPEYLNSEKQDTAVSTGFCECCKVIGESDFCSSCSKLATSDAYSHKPDLFVTDQLIFDTDDNPCVNKGLEQKPNFDSKCLISSFDKKGQEGSSSTSMERLPGMCSGHGNTNAETDVNVLQIDKCVCAEQDMQTCLLRPDGSLSTVVHSERRPVDYVEMTFSKKPPTIDWMKRISDDASFADASFATGLHNCTFTLDMDNHEGTSCCNSNLLDLEGRDADEILPFFADKCQEEKEVHYKSYKNKEVHNFHKETVLGVPTHYQNDGSFLYLLTTAYSPPSVACVHKWLLHLAPRNTTDASGTSRDNFRSALLEPSSLKHNSSVGFVNEENNSWNKGKTSPEPPKLNAASCRNMINSQGSPSDACHGTLPESGSVPHAKPCLDQLSLKNHENLKTQINLCHTEVTTEPHSGGTNVKEKERTESWQDVSQISGPDARSKLTPLSQIGFRDPASVGAGQQLTLLSIEVQAESRGDLRPDPRFDAINVIALAIQEDNDHTLEVCVLLRSSDGESCQRNFDGISGCNVIVSSEEKHLINHFVKIIRSFDPDILMGWEVQGGSLGFLAERAAHLGIVLLNNISRTPTSETKIPARNSATPEKGMPDDLKPEALIADSVVLEDATIEDEWGRTHASGIHVGGRIVLNIWRLMRGEIKLNMYTIEAVAEAVLRRKIPSIPSRILTRWFSSGPGQARFRCIEYFLERAKLNFEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYADPVIVLDFQSLYPSMIIAYNLCFCTCLSKVLPSKANTLGVSSFSPDPQLLMDLKHQILLTPNGVMYVPSKVRKGVLPRLLEEILSTRIMVKQAMKKLTASQQVLHRIFNARQLALKLIANVTYGYTAAGYSGRMPCAELADSIVQCGRRTLEQAISFVNAHDKWNARVIYGDTDSMFVLLKGRTVKESFRIGQEIASAITSMNPNPVALKMEKVYHPCFLLTKKRYVGYSYESPEQAEPSFDAKGIETVRRDSCGAVTKTLEQSLRLFFEHQDISKVKVYLQRQWTRIISDRVSVQDFVFAKEVRLGTYSSRASSLPPAAIVATKAMKADPRAEPRYAERIPYVVIHGEPGARLIDMVVDPLDLLALDSPFRLNDLYYINKQIIPALQRVFGLVGADLSQWFLLMPRPVRLAVTKSHTYAPNARKTRIDYYYLSKHCILCGELVQASTHLCDKCSKKGPAVATAVIGRTSKLERDIQHLATICRHCGGGDWILESGVKCTSLACTVFYERRKVQKEFQALSAVATEAGFYPRCMVEWF* 2157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01305 2156 FunFam DNA polymerase zeta 1688 1747 - -
Eupl07g01305 2156 CDD POLBc_zeta 1569 2016 - -
Eupl07g01305 2156 MobiDBLite consensus disorder prediction 1240 1271 - -
Eupl07g01305 2156 FunFam DNA polymerase 30 196 - -
Eupl07g01305 2156 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 5 2149 IPR030559 GO:0006281|GO:0016035|GO:0019985
Eupl07g01305 2156 FunFam DNA polymerase 1863 2031 - -
Eupl07g01305 2156 CDD DNA_polB_zeta_exo 1291 1543 - -
Eupl07g01305 2156 ProSitePatterns DNA polymerase family B signature. 1788 1796 IPR017964 GO:0000166|GO:0003676
Eupl07g01305 2156 SUPERFAMILY Ribonuclease H-like 36 1568 IPR012337 -
Eupl07g01305 2156 Gene3D Helix hairpin bin 1687 1747 - -
Eupl07g01305 2156 Pfam C4-type zinc-finger of DNA polymerase delta 2055 2128 IPR025687 -
Eupl07g01305 2156 MobiDBLite consensus disorder prediction 407 440 - -
Eupl07g01305 2156 Gene3D DNA Polymerase, chain B, domain 1 29 196 - -
Eupl07g01305 2156 Pfam DNA polymerase family B, exonuclease domain 1292 1421 IPR006133 -
Eupl07g01305 2156 Pfam DNA polymerase family B, exonuclease domain 55 231 IPR006133 -
Eupl07g01305 2156 Pfam DNA polymerase family B 1562 2009 IPR006134 GO:0000166|GO:0003677
Eupl07g01305 2156 Gene3D - 1863 2026 IPR042087 -
Eupl07g01305 2156 FunFam DNA polymerase 1301 1604 - -
Eupl07g01305 2156 PRINTS DNA-directed DNA-polymerase family B signature 1786 1794 IPR006172 GO:0000166|GO:0003676|GO:0003887
Eupl07g01305 2156 PRINTS DNA-directed DNA-polymerase family B signature 1730 1742 IPR006172 GO:0000166|GO:0003676|GO:0003887
Eupl07g01305 2156 PRINTS DNA-directed DNA-polymerase family B signature 1621 1634 IPR006172 GO:0000166|GO:0003676|GO:0003887
Eupl07g01305 2156 SMART polmehr3 1292 1800 IPR006172 GO:0000166|GO:0003676|GO:0003887
Eupl07g01305 2156 MobiDBLite consensus disorder prediction 414 430 - -
Eupl07g01305 2156 Gene3D Palm domain of DNA polymerase 1607 1852 IPR023211 -
Eupl07g01305 2156 SUPERFAMILY DNA/RNA polymerases 1608 2020 IPR043502 -
Eupl07g01305 2156 Gene3D - 1304 1604 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01305 Eupl-Chr7 33681547 33734218 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01305 1296 2135 Core DNA Replication Machinery Family AT5G63960 27.972 1.30e-86 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01305 K02350 - msin:131231593 2594.3