Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01293 ATGGCGAAACCCTCCAATTCTGAGGTTTCATCCGAGGAATCTCCGTCGAACGGTTCGATTTCCTCAGAGGAAGAACAGAAGAATGAAGAAATCAACGAAGAAGAGGAAGAGGACGAGGAAGAACTCGAAGCCGTCGCGAGGACGACTGGTTCAAGTGATGATGAAGCGAGGGAGGAGGATTCTCAATCGACCGATCACGATGTCAGCGGCGATGCGAAGAGCGACGAGGATGATGATGAAGAGGCTGGAAACTCTAACACTGAAGTTGGAAAGCGTGAAAGGGCCAGGCTGAGAGAAATGCAAAGGTTTAAGAAACAAAAGGTCCAGGAGATTTTGGATGCCCAGAATGCTTCCATCAATGCTGACATGAACAACAAAGGCAAGGGGCGTTTGAAGTATCTTCTACAGCAGACAGAGATATTTGCTCATTTTGCAAAAGGCAATCAATCTGCGTCTCAGAAGAAACCAAGGGGAAGGGGTCGTCATGCATCCAAAGTAACTGAGGAGGAAGAGGACGAAGAATGCCTCAAGGAGGAAGAGGATGGTTATTCTGGTGCAGGAGGTACACGATTGGTGACACAGCCTTCTTGTATTCAAGGGAAGATGAGGGATTACCAACTAGCTGGATTAAACTGGCTGATACGGCTCTATGAGAATGGCATCAATGGAATTCTTGCAGATGAGATGGGGCTTGGTAAGACACTGCAGACCATATCCCTATTGGGTTATTTGCACGAGTTCAGAGGAATTACTGGCCCTCATATGGTGGTTGCCCCAAAATCTACTCTTGGCAACTGGATGAAGGAGATTCGGCGCTTTTGCCCAATTTTGCGTGCTGTAAAATTCCTAGGAAATCCAGATGAAAGGAAGCATATACGTGAGAAACTACTGGTGGCTGGGAAGTTTGACGTCTGTGTGACTAGTTTTGAAATGGCCATCAAAGAAAAATCTTCTTTACGCCGTTTTAGCTGGCGCTATGTTATTATTGACGAGGCTCATAGAATCAAGAATGAGAATTCACTTCTTTCAAAAACAATGAGACTCTACAGTACTAATTACCGACTTCTTATTACGGGGACACCTCTTCAGAACAATCTCCACGAGCTCTGGTCTCTTCTTAACTTTCTACTTCCAGAGATATTTAGTTCTGCTGAAACCTTTGATGAATGGTTCCAAATATCTGGTGAAAATGACCAGCAAGAGGTTGTTCAACAGCTTCACAAGGTCCTCCGTCCGTTTCTCCTCCGAAGGTTGAAGTCCGATGTTGAGAAAGGTTTACCTCCAAAGAAAGAAACAATACTTAAAGTAGGGATGTCCCAATTGCAGAAGCAGTTTTATCGGGCTCTATTGCAGAAGGATCTAGAGGTTGTTAATGCTGGTGGAGAGCGTAAACGTCTTCTGAATATTGCAATGCAGCTGCGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGCCCTCCTTTCACTACTGGAGAGCATCTTATTACCAATGCAGGTAAAATGGTTCTTTTAGACAAGTTGCTCCCCAAGCTGAAGGAGCGAGATTCTAGGGTCCTAATATTCTCACAGATGACTAGACTGCTGGACATTCTGGAAGACTATTTAATGTTCCGTGGGTACCTGTATTGTCGGATTGATGGAAATACTGGTGGAGATGATCGTGATGCTTCCATTGAAGCCTTTAACCAGCCAGGAAGTGACAAGTTCATCTTCCTACTGTCAACTAGAGCAGGTGGCCTAGGTATCAATCTGGCCACTGCCGATGTTGTCATTATATACGACAGCGATTGGAACCCACAAGTGGATTTGCAAGCACAGGACCGTGCCCACAGGATTGGTCAAAAGAAAGAAGTTCAAGTGTTTCGTTTCTGCACAGAGTACACCATAGAGGAAAAAGTGATCGAGAGGGCTTATAAAAAACTTGCACTTGATGCTTTGGTGATTCAACAAGGTCGATTAGCAGAACAGAAAACTGTTAATAAAGACGAGCTGTTGCAAATGGTTAGGTTTGGTGCTGAAATGGTTTTCAGTTCCAAGGACAGCACTATCACAGATGAAGATATTGACAGAATTATAGCTAAGGGAGAAGAGGCAACAGCTGAGCTTGATGCCAAGATGAAGAAATTTACAGAAGATGCCATCAAATTCAAAATGGATGACACTGCTGAATTGTATGATTTCGATGATGACAAGGATGAGAACAAGTTTGACTTCAAGAAACTTGTTAGCGAAAACTGGATTGAGCCGCCAAAAAGGGAGCGGAAGCGCAACTATTCGGAATCTGAATACTTCAAGCAAGCAATGCGCCAAAGTGGTCCGGCAAAGCCAAGAGAACCACGAATTCCTCGCATGCCTCAGTTGCATGATTTCCAGTTCTTTAACACACAAAGACTAAGTGAGTTATATGAGAAAGAAGTACGCTATCTCATGCAAACTAATCAAAAGAATCAGATGAAGGACACAATTGTGGATGGGGACGAACCTGAAGATATAGGGGATCCCTTGACTGCGGAAGAACAGGAAGAAAAAGAGCAGCTATTAGAAGAGGGATTCTCAACATGGACTAGGAGAGATTTCAATACCTTCATCCGGGCTTGTGAGAAGTATGGTCGGAATGACATAAAAAGTATTGCCTTTGAAATGGAGGGTAAAACAGAAGAGGAAGTTGAACGATATGCCAAAATTTTCAAAGAAAGGTATAAGGAGTTAAATGATTATGATAGGATAATCAAGAACATTGAGAGAGGGGAAGCAAGAATCTCTCGGAAAGATGAGATCATGAAAGCAATTGGGAAGAAGTTGGACCGTTACAAGAATCCATGGTTGGAACTGAAGATTCAGTATGGTCAGAATAAAGGGAAGCTGTACAATGAAGAGTGTGATCGTTTTATGTTATGCATGGTTCACAAGCTTGGGTATGGGAATTGGGACGAGCTCAAGGCAGCTTTCCGCACATCGCCTTTGTTTCGTTTTGATTGGTTTGTGAAGTCTCGTACCACTCAAGAACTCGCAAGGCGCTGTGATACCCTCATTCGGTTGGTGGAGAAAGAAAACCAAGAATTTGATGAGAGGGAGAGACAAGCTCGGAAAGATAAGAAGCTTGCCAAGAATATGACACCATCAAAGCGAGCTATGACAAGACCCCCAGCTGAGAGCCCTGCTCCCACTTTAAAGAAGCGAAGGCAACTATTGATGGACGACTATCCAAGCTCGGGGAGGAGGAGGAAGTGA 3243 0.4397 MAKPSNSEVSSEESPSNGSISSEEEQKNEEINEEEEEDEEELEAVARTTGSSDDEAREEDSQSTDHDVSGDAKSDEDDDEEAGNSNTEVGKRERARLREMQRFKKQKVQEILDAQNASINADMNNKGKGRLKYLLQQTEIFAHFAKGNQSASQKKPRGRGRHASKVTEEEEDEECLKEEEDGYSGAGGTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMKEIRRFCPILRAVKFLGNPDERKHIREKLLVAGKFDVCVTSFEMAIKEKSSLRRFSWRYVIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQLQKQFYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGEHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGDDRDASIEAFNQPGSDKFIFLLSTRAGGLGINLATADVVIIYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDKDENKFDFKKLVSENWIEPPKRERKRNYSESEYFKQAMRQSGPAKPREPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTNQKNQMKDTIVDGDEPEDIGDPLTAEEQEEKEQLLEEGFSTWTRRDFNTFIRACEKYGRNDIKSIAFEMEGKTEEEVERYAKIFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEFDERERQARKDKKLAKNMTPSKRAMTRPPAESPAPTLKKRRQLLMDDYPSSGRRRK* 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01293 1080 FunFam ISWI chromatin-remodeling complex ATPase CHR11 942 1045 - -
Eupl07g01293 1080 MobiDBLite consensus disorder prediction 146 187 - -
Eupl07g01293 1080 MobiDBLite consensus disorder prediction 1025 1080 - -
Eupl07g01293 1080 CDD SF2_C_SNF 503 628 - -
Eupl07g01293 1080 Pfam HAND 766 853 IPR015194 GO:0003677|GO:0006338|GO:0031491
Eupl07g01293 1080 CDD DEXHc_SMARCA1_SMARCA5 199 419 IPR044754 GO:0005524
Eupl07g01293 1080 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 214 379 IPR014001 -
Eupl07g01293 1080 FunFam Chromatin-remodeling complex ATPase 203 418 - -
Eupl07g01293 1080 FunFam ISWI chromatin-remodeling complex ATPase CHR11 754 853 - -
Eupl07g01293 1080 ProSiteProfiles SANT domain profile. 853 905 IPR017884 -
Eupl07g01293 1080 MobiDBLite consensus disorder prediction 1064 1080 - -
Eupl07g01293 1080 Pfam Helicase conserved C-terminal domain 505 617 IPR001650 -
Eupl07g01293 1080 SMART ultradead3 198 390 IPR014001 -
Eupl07g01293 1080 Gene3D iswi atpase 909 941 - -
Eupl07g01293 1080 Coils Coil 17 48 - -
Eupl07g01293 1080 Gene3D - 942 1045 - -
Eupl07g01293 1080 SMART helicmild6 533 617 IPR001650 -
Eupl07g01293 1080 MobiDBLite consensus disorder prediction 44 71 - -
Eupl07g01293 1080 SUPERFAMILY Homeodomain-like 858 907 IPR009057 -
Eupl07g01293 1080 Gene3D - 423 715 IPR027417 -
Eupl07g01293 1080 Gene3D - 203 418 IPR038718 -
Eupl07g01293 1080 FunFam ISWI chromatin-remodeling complex ATPase CHR11 423 715 - -
Eupl07g01293 1080 SUPERFAMILY Homeodomain-like 909 1031 IPR009057 -
Eupl07g01293 1080 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 188 1064 - -
Eupl07g01293 1080 MobiDBLite consensus disorder prediction 1 22 - -
Eupl07g01293 1080 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 507 658 IPR001650 -
Eupl07g01293 1080 Coils Coil 1015 1035 - -
Eupl07g01293 1080 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 765 856 IPR036306 GO:0003677|GO:0006338|GO:0031491
Eupl07g01293 1080 MobiDBLite consensus disorder prediction 84 99 - -
Eupl07g01293 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 417 IPR027417 -
Eupl07g01293 1080 Gene3D ISWI, HAND domain 754 853 IPR036306 GO:0003677|GO:0006338|GO:0031491
Eupl07g01293 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 700 IPR027417 -
Eupl07g01293 1080 Gene3D - 854 908 - -
Eupl07g01293 1080 CDD SANT 857 901 IPR001005 -
Eupl07g01293 1080 MobiDBLite consensus disorder prediction 27 43 - -
Eupl07g01293 1080 MobiDBLite consensus disorder prediction 1025 1042 - -
Eupl07g01293 1080 Pfam SLIDE 911 1021 IPR015195 GO:0003677|GO:0005634|GO:0006338
Eupl07g01293 1080 Pfam SNF2-related domain 215 482 IPR000330 GO:0005524|GO:0140658
Eupl07g01293 1080 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 854 908 - -
Eupl07g01293 1080 SMART sant 854 903 IPR001005 -
Eupl07g01293 1080 SMART sant 956 1017 IPR001005 -
Eupl07g01293 1080 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01293 Eupl-Chr7 33469814 33482803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01293 223 644 RAD5 or RAD16-like Gene Family AT1G02670 27.308 8.73e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl07g01293 SNF2_N 8.8e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01293 K11654 - nnu:104587602 1934.84