LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl07g01289	ATGGGGTGTGTATTCGGGAGAGAAGCTTCGTCGCCCAGAGCGGATTCAGAGGGGAGAGAGAAGGAGAGGAATTTAGCTGTTTCTTCACAGGTTACGGTGACAAAGAAGATCGTGAGCTCTGAGGTTCAGAATGGGGAGAAGCAGAAAGAGGAGAAGCAGGATGGGAGGGCTGAGAGGAGAAGATCCAAGCCGAATCCAAGGCTGAGTAATCCCCCGAAGCATGTACATGGGGAACAAGTCGCTGCGGGGTGGCCGCCTTGGCTCTCTGCCGTTGCTGGCGAGGCCATCAATGGTTGGACTCCTCGGCGGGCTGACACTTTCGAGAAGATTGATAAGATTGGGCAAGGAACTTACAGCAATGTGTACAAAGCTAGAGATTCATTGACGGGGAAAATTGTGGCGTTAAAGAAGGTTCGATTTGACAATTTGGAGCCTGAGAGTGTGAAGTTTATGGCTAGGGAGATTCTCATCTTGAGGCGGCTGGATCATCCCAATGTTGTGAAGTTGGAGGGTTTGGTGACTTCCAGGATGTCGTGTAGTTTATACCTTGTATTTGAATACATGGAACATGATTTGGCTGGTCTTGCTGCGAGCCCGGGAATCAAGTTTACAGAGCCACAGGTAAAATGTTATATGCATCAACTGGTGTCGGGGCTTGAACACTGTCACAACCGTGGGGTATTGCATCGTGACATCAAAGGGTCAAATCTCCTTCTTGACAATGGGGGAATACTTAAGATTGCTGATTTTGGATTGGCATCCTTCTTTGATCCTAACCACAAGCAGCCCATGACTAGTCGAGTGGTCACTCTATGGTATCGACCCCCAGAGCTTCTTTTGGGGGCTACTGATTATGGTGTAGGTGTAGACCTCTGGAGTGCGGGTTGCATTCTAGCTGAATTATTGGCTGGGAAGCCTATCATGCCTGGGCGTACAGAGGTGGAACAATTGCACAAGATTTTCAAGCTATGTGGCTCCCCTTCTGAGGAATATTGGAAAAAGTCAAAATTGCCACATGCAACAATATTTAAGCCCCAACAGCCATACAAACGGTGCATAGCAGAGACATTTAAAGATTTCGCACCATCATCACTGCCACTGATTGAAACTCTTCTTGCAATTGACCCAGCTGAACGTCAAACCGCCACTGCTGCTTTGAGGAGTGAATTTTTCACAACAAAACCTTATGCATGCGATCCTTCGAGTCTCCCACAATATCCTCCAAGCAAGGAAATGGATGCCAAACTAAGGGATGAAGAAGCTAGAAGGGTGCGAGCTGCTGGTGGCAAAGCCAATGGTGAAGGTGTGAAGAAACCTCGTGCACGTGATCGAGCTGTAAGGGCATTCCCTGCTCCAGAAGCCAATGCGGAGCTTCAAGTAAATCTTGATAGACGGCGTCTAATTACACATGCAAACGCAAAAAGCAAGAGCGAGAAGTTTCCACCACCACATCAGGATGGAGCACTTGGCTTTCCCTTGGGTTCTTCACATTACATTGATCCTACCTTTGATCCTCCGGACGTCCCATTTAGTTCCACGACATTCACTTATCAAAAAGGGCCAGTACAAACTTGGTCCGGTCCACTGGTGGACCCTGCTGCCGTTGGTGCTCCAAAACGGAAGAAACAGACAGCGGGTGATGCACGTGTACGATCCAAACTGCCAACTAAGGAATCTCATTAA	1683	0.4831	MGCVFGREASSPRADSEGREKERNLAVSSQVTVTKKIVSSEVQNGEKQKEEKQDGRAERRRSKPNPRLSNPPKHVHGEQVAAGWPPWLSAVAGEAINGWTPRRADTFEKIDKIGQGTYSNVYKARDSLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTEPQVKCYMHQLVSGLEHCHNRGVLHRDIKGSNLLLDNGGILKIADFGLASFFDPNHKQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYKRCIAETFKDFAPSSLPLIETLLAIDPAERQTATAALRSEFFTTKPYACDPSSLPQYPPSKEMDAKLRDEEARRVRAAGGKANGEGVKKPRARDRAVRAFPAPEANAELQVNLDRRRLITHANAKSKSEKFPPPHQDGALGFPLGSSHYIDPTFDPPDVPFSSTTFTYQKGPVQTWSGPLVDPAAVGAPKRKKQTAGDARVRSKLPTKESH*	561

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl07g01289	560	ProSitePatterns	Protein kinases ATP-binding region signature.	113	136	IPR017441	GO:0005524
	Eupl07g01289	560	ProSiteProfiles	Protein kinase domain profile.	107	391	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl07g01289	560	FunFam	probable serine/threonine-protein kinase At1g54610	190	431	-	-
	Eupl07g01289	560	MobiDBLite	consensus disorder prediction	25	41	-	-
	Eupl07g01289	560	MobiDBLite	consensus disorder prediction	510	560	-	-
	Eupl07g01289	560	MobiDBLite	consensus disorder prediction	42	65	-	-
	Eupl07g01289	560	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	227	239	IPR008271	GO:0004672\|GO:0006468
	Eupl07g01289	560	Gene3D	Phosphorylase Kinase; domain 1	94	189	-	-
	Eupl07g01289	560	MobiDBLite	consensus disorder prediction	1	79	-	-
	Eupl07g01289	560	Pfam	Protein kinase domain	107	391	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl07g01289	560	CDD	STKc_CDK9_like	107	391	-	-
	Eupl07g01289	560	MobiDBLite	consensus disorder prediction	542	560	-	-
	Eupl07g01289	560	FunFam	probable serine/threonine-protein kinase At1g54610	94	189	-	-
	Eupl07g01289	560	SMART	serkin_6	107	391	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl07g01289	560	SUPERFAMILY	Protein kinase-like (PK-like)	100	397	IPR011009	-
	Eupl07g01289	560	MobiDBLite	consensus disorder prediction	472	493	-	-
	Eupl07g01289	560	Gene3D	Transferase(Phosphotransferase) domain 1	190	429	-	-
	Eupl07g01289	560	PANTHER	CELL DIVISION PROTEIN KINASE	105	395	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl07g01289	Eupl-Chr7	33412034	33422954	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl07g01289	99	427	Core Cell Cycle Gene Families	AT5G10270	52.174	1.25e-119	361

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Eupl07g01289		Pkinase	8.6e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl07g01289	K08819		-	ming:122057851	975.311