Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01266 ATGTCTCTGAAGAGCATTATTCAGGACATGAAGGGGGAGATTGGTAGCATGTCAAGGAAAGGGTTTGAGGTGAAGCTTGGATATGGATTGAAGTCGAGATCACATCGGGTGGTTCAGGATGCATTTGTACCGGTTGATGGTTTGAAGCAGAGCTGTTGGGCTAACATGCCGCCTGAGCTCCTGAGGGATGTTCTAATGAGGATAGAGGCGTCTGAGATTGTGTGGCCTCCACGTAAATATGTGGTTGCTTGTGCTGGAGTTTGCAGGAGTTGGAGAGAAATCACAAAGGAGATGGTGAAGACTCTTGAATTGTCGGGCAAGCTGACGTTTCCAATCTCTCTGAAGCAGCCTGGCCCAAGGGACTCGCTCCTCCAGTGTTTCATAAAACGGAACCGAAATGCCCAAACATATCATCTATACCTCGGTTTAACTCAAGCACTTACTGATAATGGCAAGTTCCTTCTTGCTGCACGCAAGTCTCGACACACAACCTGCACAGACTACATCATCTCTCTAGATGTCGATGACATGTCAAAGGGGAGTGGGACCTACATTGGGAAGTTGAGATCAAACTTTTTGGGGACCAAGTTTACGATTTATGATGGTCAGCCTCCTTATGCTGGAGCCACGGTTACAAAAAGTCGCTCCACTAGGCTAGTGGGTTTGAAACAAGTCTCTCCCAGAGCCCCTGCTGGAAACTACCCAGTAGCGCACATTTCATATGAGTTGAATGTATTGGGTTCCAGGGGTCCAAGGAGAATGCAGTGTGTTATGGATGCAATCCCTGCCTCTGCAATCGAACCAGGAGGGTTGGCCCCCACACAGACTGAACTCCCGCTTACCAACCTGGATACCTTCCCGTCACTCCCATTTTTCCGATCAAAATCAACCCGTACGGAGAATTTTCAATCAGGACCTTTGGCTGGTCAAAAGGAAGGAATGTTGGTGTTAAAGAACAAGGCACCCAGGTGGCATGAGCAGCTCCAATGCTGGTGTCTGAACTTTCGAGGACGAGTGACAGTTGCTTCGGTTAAGAATTTTCAGCTGGTGGCTTCTCTAGAGAATGGGCAGGCTGGGCAGGAGCACGAGAAGGTCCTTCTCCAATTTGGAAAAGTGGGGAAGGATTTGTTCACCATGGATTACCGGTATCCCATCTCAGCCTTCCAAGCATTTGCTATCTGCCTCAGCAGCTTCGACACCAAGATTGCTTGTGAATGA 1218 0.486 MSLKSIIQDMKGEIGSMSRKGFEVKLGYGLKSRSHRVVQDAFVPVDGLKQSCWANMPPELLRDVLMRIEASEIVWPPRKYVVACAGVCRSWREITKEMVKTLELSGKLTFPISLKQPGPRDSLLQCFIKRNRNAQTYHLYLGLTQALTDNGKFLLAARKSRHTTCTDYIISLDVDDMSKGSGTYIGKLRSNFLGTKFTIYDGQPPYAGATVTKSRSTRLVGLKQVSPRAPAGNYPVAHISYELNVLGSRGPRRMQCVMDAIPASAIEPGGLAPTQTELPLTNLDTFPSLPFFRSKSTRTENFQSGPLAGQKEGMLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVASLENGQAGQEHEKVLLQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01266 405 Pfam F-box domain 53 99 IPR001810 GO:0005515
Eupl07g01266 405 Pfam Tub family 114 400 IPR000007 -
Eupl07g01266 405 ProSitePatterns Tub family signature 1. 335 348 IPR018066 -
Eupl07g01266 405 FunFam Tubby-like F-box protein 110 405 - -
Eupl07g01266 405 ProSitePatterns Tub family signature 2. 390 405 IPR018066 -
Eupl07g01266 405 PRINTS Tubby superfamily signature 317 334 IPR000007 -
Eupl07g01266 405 PRINTS Tubby superfamily signature 383 405 IPR000007 -
Eupl07g01266 405 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Eupl07g01266 405 PRINTS Tubby superfamily signature 335 351 IPR000007 -
Eupl07g01266 405 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Eupl07g01266 405 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Eupl07g01266 405 PRINTS Tubby superfamily signature 362 381 IPR000007 -
Eupl07g01266 405 CDD F-box_AtTLP-like 53 97 - -
Eupl07g01266 405 SUPERFAMILY Tubby C-terminal domain-like 103 405 IPR025659 -
Eupl07g01266 405 PANTHER TUBBY-RELATED 40 403 - -
Eupl07g01266 405 Gene3D Tubby Protein; Chain A 112 405 IPR025659 -
Eupl07g01266 405 SUPERFAMILY F-box domain 46 96 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01266 Eupl-Chr7 33028796 33036799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01266 1 405 TUB Transcription Factor Family AT2G47900 77.206 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Eupl07g01266 Tub 8.6e-113 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01266 K19600 - nnu:104585847 730.324