Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01255 ATGCAGATATTCGTGAAAACGCTGACAGGAAAGACGATTACGCTGGATGTGGAAAGCTCGGATACGATCGAAAATGTAAAAACGAAGATTCAGGACAAGGAGGGGATTCCTCCTGATCAGCAGCGATTGATTTTCGCTGGTAAGCAGTTGGAAGACGGGCGTACACTGGCGGACTACAACATACAGAAAGAATCGACTCTTCACCTGGTGCTCCGCCTACGTGGTGGTGTTGGGCCTCTTGGTGTTGGGTTGTAG 255 0.4941 MQIFVKTLTGKTITLDVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGVGPLGVGL* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01255 84 FunFam Polyubiquitin 3 1 76 - -
Eupl07g01255 84 Gene3D - 1 79 - -
Eupl07g01255 84 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Eupl07g01255 84 CDD Ubl_ubiquitin 1 74 - -
Eupl07g01255 84 SMART ubq_7 1 72 IPR000626 GO:0005515
Eupl07g01255 84 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Eupl07g01255 84 PANTHER UBIQUITIN 1 76 - -
Eupl07g01255 84 PRINTS Ubiquitin signature 53 74 IPR019956 -
Eupl07g01255 84 PRINTS Ubiquitin signature 11 31 IPR019956 -
Eupl07g01255 84 PRINTS Ubiquitin signature 32 52 IPR019956 -
Eupl07g01255 84 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Eupl07g01255 84 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01255 Eupl-Chr7 32851869 32852508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01255 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 94.805 9.14e-50 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01255 - K08770 dct:110107944 134.806