Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01254 ATGGGTTCAGTTGGGGATGCAGAGGGATTGAACTTGGAGGGCATATGCCCTAATGTGAAGGGCACTAACTGCATAGAGGAGGGGTTGCTTTGTACACACCAAGATGAGAAGGAAAGTCTATATGCTGAACTCTGGCATGCATGCGCGGGCCCCCTGGTTCGCGTTCCTCGCATCGGGGAGAAGGTCTTCTACTTCCCCCAAGGTCACTTGGAACAGGTTGAGGCGTGTACGAATCAAGAAACCAGTTTACAAATGCCGAAGCACAATTTGGCTTCCAAGATCCTCTGCAGGGTTGTACATGTTCAACTTAAGGCTGAATTGGACTCAGATGAGTTATTTGCACAAGTGACGTTACTTCCAGAGAAAAATCAAGAGGAGCTTAGTGCGGAGAAGGGAAGTTTTCAAACTCTGCCTCAGAGGACTCATGTATACTCCTTTTGCAAAACACTCACTGCATCGGATACAAACACGCATGGTGGATTTTCTGTTTTTAAGCGACATGCTGATGAATGCCTTCCACCTCTGGATATGTCACAACAGCCCCCATCACAGGAGCTGATAGCAAAAGACTTGCATGGAGTAGAGTGGCGCTTCCGCCATATTTATCGTGGTCAGCCGAGGCGGCACTTGCTTACCAGTGGTTGGAGTACATTCGTGAGCTCAAAAAGGCTAGTTGCTGGGGATGCTTTTATTTGCCTCAGAGGAGAACATGGCGAACTTTGGGTTGGGGTTCGCCGCGCTATTAAGCTACAGAAGAATGCATCGTCATCAGTCATATCCAGTCAAAGCATGCAACTTGGTGTACTTGCCACCGCTTCTCATGCTATATCTACTGGGACCATGTTCAGTGTGTATTATCAGCCTAGGACAAGCCCTTCTGAGTTCATAATTCCATATGATCAGTATGTGAAGTCGGTTGAAATCAACTATTCATTGGGAATGAGGTTCAGAATGAAGTTTGAGGGTAACGAATGTCCAGAACAAAGACTTGCAGGTACCATAGTTGGTATTGAAGATGTTGATCCGATCAGGTGGCCTGGTTCAAAATGGAGATGTCTCATGGTTCATTGGGACGAAAACTCTGACACGGTTATACGTCCAGACAAAGTTTCTCCATGGAAGATAGAACCATTTGCAGTCACCAACTTGAGGCAGCCTTCTCTTCCACCGGGACCAAAGAAGTCCCGTACCCGTCATTCATCATCTCCTGAAACATCTATCTTGGTCAATGATGGCTTATTGCAGGGTTCGGTCGAGCATGCACCACCACCTCAGCGACACTCAGGGGTCTTGCAAGGTCAAGAAAACAGTGCCATAGGTTCTCATGAGCCGGGAAATGCACAAAAGCCACCAATGGCAAATTTGGTTCCTCCACCAAACTCCAGTCGGGATCAGACACAAATGGGATTGGAGAATCAGCTTTACTTTCAGATGCATGACCTATTTTCTCTGTATCCAGGCAACATGTTACCCGTTCACAGTGAAATTCCTGATAATTTGGGGCTTGGAAGCTACTGGTTGCCACCATTTTCCACTTATGGGACCAATGGCGATGCTGGATTAGGGGAAAACTGGTCTGTTCGAAATGTCAGATCCAAAAGTTCTGGGTTTAAGGAATGGAGTGCTCCTGAGCCCAAGGAAGTAGTAGATACACCGATGACTCAAGGCAGCAACCCGTGTATGCTTTTTGGTGTTGATTTAGTTAAAAGTCCACTAGAGCCCACATCACTGAATGTTGTGACTTCCAGTGAGCTCCAGCATAATTGTGATGCCCTTCTGGTGGAATCACAGTCGGGCAATGCAGAGTCTGAAAAACTTTCGGAGCCATCCAAGATTATGAAGCCATCTGAATCCAGTGGGTCTGGCTGCAGTTCAGAGAAACTGTGCAAGAACTGCTATGTCACCACTCGAAGTTGCACCAAGGTCCAAAAGTATGGAACCGCTCTCGGGAGATCCGTGGACCTCATGAGATTCAACGGGTATGATGAACTTATAAGTGAACTTGATCGGATGTTTGATTTCAATGGACAGTTAATGGACCGGAACAATGGCTGGAATGTGATATACACAGATGATGAAGGCGACACAATGCTGATTGGAGATTTCCCATGGCCGGAATTCCGGTCCATTGTGCGAAAGATGTTCATTTGCCGAAAAGAAGAAGTCGATAAATTGAATCCTTGCTCGCCAAATCCGATACCCCTGTAA 2208 0.4674 MGSVGDAEGLNLEGICPNVKGTNCIEEGLLCTHQDEKESLYAELWHACAGPLVRVPRIGEKVFYFPQGHLEQVEACTNQETSLQMPKHNLASKILCRVVHVQLKAELDSDELFAQVTLLPEKNQEELSAEKGSFQTLPQRTHVYSFCKTLTASDTNTHGGFSVFKRHADECLPPLDMSQQPPSQELIAKDLHGVEWRFRHIYRGQPRRHLLTSGWSTFVSSKRLVAGDAFICLRGEHGELWVGVRRAIKLQKNASSSVISSQSMQLGVLATASHAISTGTMFSVYYQPRTSPSEFIIPYDQYVKSVEINYSLGMRFRMKFEGNECPEQRLAGTIVGIEDVDPIRWPGSKWRCLMVHWDENSDTVIRPDKVSPWKIEPFAVTNLRQPSLPPGPKKSRTRHSSSPETSILVNDGLLQGSVEHAPPPQRHSGVLQGQENSAIGSHEPGNAQKPPMANLVPPPNSSRDQTQMGLENQLYFQMHDLFSLYPGNMLPVHSEIPDNLGLGSYWLPPFSTYGTNGDAGLGENWSVRNVRSKSSGFKEWSAPEPKEVVDTPMTQGSNPCMLFGVDLVKSPLEPTSLNVVTSSELQHNCDALLVESQSGNAESEKLSEPSKIMKPSESSGSGCSSEKLCKNCYVTTRSCTKVQKYGTALGRSVDLMRFNGYDELISELDRMFDFNGQLMDRNNGWNVIYTDDEGDTMLIGDFPWPEFRSIVRKMFICRKEEVDKLNPCSPNPIPL* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01254 735 SUPERFAMILY CAD & PB1 domains 636 714 - -
Eupl07g01254 735 Gene3D - 633 726 - -
Eupl07g01254 735 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 726 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl07g01254 735 CDD B3_DNA 145 246 IPR003340 GO:0003677
Eupl07g01254 735 MobiDBLite consensus disorder prediction 598 623 - -
Eupl07g01254 735 Gene3D - 143 248 IPR015300 -
Eupl07g01254 735 Pfam B3 DNA binding domain 146 247 IPR003340 GO:0003677
Eupl07g01254 735 Gene3D - 309 383 - -
Eupl07g01254 735 FunFam Auxin response factor 309 382 - -
Eupl07g01254 735 Pfam AUX/IAA family 634 726 IPR033389 -
Eupl07g01254 735 SMART B3_2 146 248 IPR003340 GO:0003677
Eupl07g01254 735 MobiDBLite consensus disorder prediction 416 466 - -
Eupl07g01254 735 ProSiteProfiles PB1 domain profile. 637 719 IPR000270 GO:0005515
Eupl07g01254 735 Pfam Auxin response factor 272 353 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl07g01254 735 MobiDBLite consensus disorder prediction 429 443 - -
Eupl07g01254 735 FunFam Auxin response factor 144 248 - -
Eupl07g01254 735 ProSiteProfiles B3 DNA-binding domain profile. 146 248 IPR003340 GO:0003677
Eupl07g01254 735 MobiDBLite consensus disorder prediction 381 404 - -
Eupl07g01254 735 SUPERFAMILY DNA-binding pseudobarrel domain 138 275 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01254 Eupl-Chr7 32838496 32844744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01254 635 727 B3 DNA Binding Superfamily AT5G62000 60.215 7.37e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl07g01254 AUX_IAA 5.9e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01254 - - nnu:104585724 870.152