Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01245 ATGCAAGTTGAACCAGGCGTTAATGGCGTCGAAGAAGACTGGCGAGAGGCTGGTCACCAAATCATGGGGCTCACAAATAAAGAAATTACACCTTCAGGACCCAGTGTAAGACCTGCAGATCTCTTACAGCAAATACACCCAAGACAAGTAGATTTTGGCAATAGCCGTAGGGAAAAGGGTCTACTTCAGCCTCAAGGTTCCTTGGAAGGTAGTTCAACTCCGGGAGCCTTATTGCAAGGTCTAAACAAAAAGGACAAGGTAACTGTACTTGATGGCGAGGGAAGCTCCCTCCTCAATCTATACCCCAAGGAGGTTCCTGGGAGCCCTGTATTGGCCAGTTTTATTTCGTTACTTCCATGGAAAAGATGTGTTTCTCTTCCTGTTACACCCACATCAAACTTGTCCCCTTCAGCTACCGCGCCTTATACAGAAAGGATGTGTGGTCAACAACACACTTCACAAAGACTGGCAGTTCTAGCTAAGGTTCCGAGGTCCTTTTCTGTACCAGTGCGAACTGTTGTTATTGTGAGATCTGGATCCTTCACCACCCATAAGGAGCCTGTGCAAACAGATACTACTGATGATCAAATAAGTCGTATTCGTATGGAAGATGATGATGAAGAGATTCCCGAAGAGGATGCAGTTTGCAGGATCTGTTTGGCTGGGTTGTGTGAAGGAGGAAATACATTCAAGATGCAGTGCAGTTGCAAGGGTGATCTCAGGCTTACACACGAAGAATGTGCAGTGAAGTGGTTCAGTGTCAAAGGCAACAAGAATTGTGACGTCTGTGGGCAAGACGTTCTTAATTTACCAGTCACTGTGCTTCGGGTGCATTCTGCTCAAAGGAACTTCAGACTGGAGCACAACAGAGAGAGCCCAAATTCACAGTCAATAAGTGCCTGGCCCGACCTGGTGGTGCTCATCTTGATTAGCGCAATAAGTTATTACTTCATCCTTGAGCAGCTACTGAGTCATGACATGAAATCTGAAGCGAATGTGATTGCAGCACCATTTTCTTTCACCCTGGCCCTTTTGGGATCAATGTTCGCAACCATTATAGCAATGAAGGAGAATATATGGACATTTGCAGCTCTTGAGTTTGCCCTTGTGGTCCTCTTCCTTCATCTGTTCTATTCTGCACTTCAAGTGAGTGCGCTTTATGCAGTCCTGCTTTCGGCAGTTTTGGGTTTTGGGATTGCAATGAGCCTCCACTTCTTGTATCATCAGATATTTCCATCGCGAGTTCGGGTTACCCAGACAGATCAACTGTAG 1272 0.4599 MQVEPGVNGVEEDWREAGHQIMGLTNKEITPSGPSVRPADLLQQIHPRQVDFGNSRREKGLLQPQGSLEGSSTPGALLQGLNKKDKVTVLDGEGSSLLNLYPKEVPGSPVLASFISLLPWKRCVSLPVTPTSNLSPSATAPYTERMCGQQHTSQRLAVLAKVPRSFSVPVRTVVIVRSGSFTTHKEPVQTDTTDDQISRIRMEDDDEEIPEEDAVCRICLAGLCEGGNTFKMQCSCKGDLRLTHEECAVKWFSVKGNKNCDVCGQDVLNLPVTVLRVHSAQRNFRLEHNRESPNSQSISAWPDLVVLILISAISYYFILEQLLSHDMKSEANVIAAPFSFTLALLGSMFATIIAMKENIWTFAALEFALVVLFLHLFYSALQVSALYAVLLSAVLGFGIAMSLHFLYHQIFPSRVRVTQTDQL* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01245 423 ProSiteProfiles Zinc finger RING-CH-type profile. 208 270 IPR011016 GO:0008270
Eupl07g01245 423 CDD RING_CH-C4HC3_MARCH 216 264 - -
Eupl07g01245 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 267 IPR013083 -
Eupl07g01245 423 SMART ringv_2 215 264 IPR011016 GO:0008270
Eupl07g01245 423 PANTHER OS02G0165000 PROTEIN 64 420 - -
Eupl07g01245 423 Pfam RING-variant domain 216 263 IPR011016 GO:0008270
Eupl07g01245 423 SUPERFAMILY RING/U-box 212 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01245 Eupl-Chr7 32733586 32742184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01245 202 323 C3H Transcription Factor Family AT2G37950 30.000 1.65e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01245 - - mof:131150890 442.965