Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01222 ATGGGGAGGTACAGAAGCCGGAGCAGAAGCTACAGCCCTCGACGGAGCAGAAGCCCTTCTCGACGGAAGCGATACGACGACCCTCGAGACATGTCCCGAGGCAGCAGGTCTTACAGAGACAGACGATCCTCTGCTCCTACTGGGTTGCTTATTCGGAACATCTCCCTCGATGCAAGGCCTGAAGATCTTAGGATACCATTTGAACGTTTTGGTCCAGTAAAGGATGTGTATCTTCCTAAGAATTACTATACTGGGGAGCCACGAGGCTTTGGTTTTGTGAAGTTCCGTAATGCTGAAGATGCAGCTGAAGCCAAGCAACAGATGAACCACCAAGTTATTGGTGGACGTGAGATTACAATTGTTTATGCTGAAGAAAACAGGAAAACTCCTCAAGAAATGCGTACGACTACACGCATAAGTGACCGATATGGGGGAGGCTATAGAAGGAGAAGTCCACCGAGGTCCCCAAGACGCCGATATCGATCCTATTCACGCTCCCGATCTCCAGCCAGGCACGACTCAAGAGACAGGGGCCGTGGTTCAAGGGATAATTACTTGCCACGACGATCCATCTCAAGGTCCCCCTCTCCCCGTGATGAGAGGGACTACAGGTCGGACCAGAGGTCACCTAGTCCGAGGGAGAACGGTCGGAGTCCATCAAGGTCTCGTTCCTACAGTCCACGCTGA 687 0.5211 MGRYRSRSRSYSPRRSRSPSRRKRYDDPRDMSRGSRSYRDRRSSAPTGLLIRNISLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRNAEDAAEAKQQMNHQVIGGREITIVYAEENRKTPQEMRTTTRISDRYGGGYRRRSPPRSPRRRYRSYSRSRSPARHDSRDRGRGSRDNYLPRRSISRSPSPRDERDYRSDQRSPSPRENGRSPSRSRSYSPR* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01222 228 SMART rrm1_1 48 121 IPR000504 GO:0003723
Eupl07g01222 228 MobiDBLite consensus disorder prediction 193 211 - -
Eupl07g01222 228 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 119 IPR000504 GO:0003723
Eupl07g01222 228 MobiDBLite consensus disorder prediction 20 40 - -
Eupl07g01222 228 MobiDBLite consensus disorder prediction 1 44 - -
Eupl07g01222 228 MobiDBLite consensus disorder prediction 1 19 - -
Eupl07g01222 228 MobiDBLite consensus disorder prediction 124 228 - -
Eupl07g01222 228 SUPERFAMILY RNA-binding domain, RBD 44 151 IPR035979 GO:0003676
Eupl07g01222 228 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 42 225 - -
Eupl07g01222 228 MobiDBLite consensus disorder prediction 166 186 - -
Eupl07g01222 228 SMART rrm2_1 48 121 IPR003954 GO:0003676
Eupl07g01222 228 MobiDBLite consensus disorder prediction 212 228 - -
Eupl07g01222 228 Gene3D - 2 138 IPR012677 -
Eupl07g01222 228 MobiDBLite consensus disorder prediction 151 165 - -
Eupl07g01222 228 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01222 Eupl-Chr7 32436708 32443867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01222 51 109 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 1.02e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01222 K12900 - nnu:104613366 246.899