Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01219 ATGTCAGGTGAGGAGGGTGTTGTCGCAGCTGCAGCCGAGACGCCTGCTCCTGCTCTAGGTGAGCCCATGGACATCATGACAGCTCTTCAGCTTGTGCTGAAGAAATCGCTAGCCCATGACGGGCTTGCTCGAGGGCTCCACGAAGGCGCCAAGGTGATTGAGAAGCATGCAGCACAGCTTTGTGTATTGGCAGAGGACTGTGACCAGCCCGACTATGTTAAACTGGTCAGAGCGCTTTGTGCCGACCACAATGTAAGCTTGATATCAGTTCCAAGTGCTAAAACTCTTGGCGAGTGGGCAGGCGTAAGTACAAAACTATTGCCAATTTCTATGTTTATGAAATTCTATTTTTCCCTCTTCCATGAGAAACATCACACACCTATAATTTGGTATTTAGATTGTTTAGTTGATAGTTGTATGTTGCTTATTCACTTCTCTAATTAA 444 0.464 MSGEEGVVAAAAETPAPALGEPMDIMTALQLVLKKSLAHDGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVRALCADHNVSLISVPSAKTLGEWAGVSTKLLPISMFMKFYFSLFHEKHHTPIIWYLDCLVDSCMLLIHFSN* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01219 147 PRINTS Ribosomal protein S12E family signature 32 45 IPR000530 GO:0003735|GO:0005840|GO:0006412
Eupl07g01219 147 PRINTS Ribosomal protein S12E family signature 87 108 IPR000530 GO:0003735|GO:0005840|GO:0006412
Eupl07g01219 147 PRINTS Ribosomal protein S12E family signature 46 62 IPR000530 GO:0003735|GO:0005840|GO:0006412
Eupl07g01219 147 PANTHER 40S RIBOSOMAL PROTEIN S12 16 103 - -
Eupl07g01219 147 FunFam 40S ribosomal protein S12 8 106 - -
Eupl07g01219 147 ProSitePatterns Ribosomal protein S12e signature. 28 46 IPR000530 GO:0003735|GO:0005840|GO:0006412
Eupl07g01219 147 Gene3D - 9 111 IPR029064 -
Eupl07g01219 147 SUPERFAMILY L30e-like 21 105 IPR029064 -
Eupl07g01219 147 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 28 104 IPR004038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01219 Eupl-Chr7 32409995 32417083 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01219 21 102 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 70.732 1.49e-39 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01219 K02951 - ncol:116253963 180.259