Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01176 ATGAAAGCTCTTGGTCATACTGGCATTACAAAACCCAGTTTGTTGCTCTCGCACACGGGGTTATCTGTTCTTACCTTCCGTATCCCCCAATTGAATCCTCCATTGACTCCTCGAATCCTGAGCCTAGGAAAGAAGAAAAATGGATCAATAACCAGAATTCAGTATTCGATTGCCGAGAGAACATTTGCTTCTAGTTCTGTGGATTCATCTTTGTCAAAGTCACCTACTACTCATTTGAGTCGGAAACAGGGAGGCTCTCCTTCCCTTTACAGTAGGCCTAGCTTACTAGAAATGAAGAACGAGAGGATTGCTAACCGTGCCCGGGTTTACGAGTTTTTGAGGGGTCTTGGTATTGTTCCTGATGAGCTCGATGGGTTGGAGCTTCCTGTCACGGTCGAGGTTATGAGGGAACGTGTGGACTTCCTTCATAAACTTGGCCTCACAATCGAGGACATTAACAACTACCCACTTGTCCTCGGCTGCAGTGTGAAGAAGAACATGATCCCTGTGCTTGATTATCTTGGGAAATTGGGTGTCCGCAAATCTACTTTTACGGACTTCTTGCGGAGATACCCTCAAGTCCTTCACGCTAGCGTTGTAGTAGACCTCGCTCCCGTCGTGAAGTATCTCCAAGGGATGGATATCAAGCCAAATGTTGTCCCTCGGGTTCTTGAGAGGTATCCAGAGGTTCTGGGGTTCAAGCTTGAGGGGACCATGAGCACGTCTGTGGCCTATTTGGTTGGAATTGGTGTGGCAAGAAGAGAGATCGGAGGGGTTCTAACAAGATACCCTGAGATATTGGGGATGCGAGTCGGGAGGGTGATCAAGCCTTTTGTGGAGTATCTTGAAAGCCTAGGGATTCCGAGACTAGCTGTGGCGAGGTTGATTGAGAAGCGGCCCCACATCCTTGGATTTTGGTTGGGAGATCGAGTGAAACCAAATGTGGAAGCCCTTTTGGAATTTGATGTGAGAAAAGAGTCACTTGCTTCCGTGGTAGCACAGTATCCTGAGATTTTAGGAATTGAGCTGAAGCCAAAGCTTCTCTCCCAACGAAGCTTGCTCAACTCAAGCATTGATGTGGATCCTAAGGATTTTGGCAGAGTGGTTGAGAAGATGCCACAGATTGTTAGCCTCAACCAGTCTCCTTTATTGAAGCATGTTGATTTCCTAAAGGATTGTGGTTTCTCCTTACCACAAGTGAGAAAGATGGTTGTGGGGTGTCCCCAATTACTCGCTTTGAATGTTGACATTATGAAGCTTAGCTTTGATTACTTCCAAACAGAGATGGGTATGGATTTGGATGATTTGGTTGCCTTCCCAGCTTTCTTTACTTATGGTCTGGAGTCAACAATAAGGCCTAGACATCGGGCAGTCGTCAAGAAGGGCTTGAAATGTTCTCTTGGCTGGCTTCTTAATTGCTCTGATGAGAAGTTTGAGGAACGGATGAACTATGACACTATCAACATGGAGGAAATGGAAATGGAGCCATCATTCAACATGAGTACACTGTTGGAACCAAGGGGAGATGAATCATCTTCTGAAGATGAGGAGGACAGCGATGATGAATATGCATAA 1575 0.4603 MKALGHTGITKPSLLLSHTGLSVLTFRIPQLNPPLTPRILSLGKKKNGSITRIQYSIAERTFASSSVDSSLSKSPTTHLSRKQGGSPSLYSRPSLLEMKNERIANRARVYEFLRGLGIVPDELDGLELPVTVEVMRERVDFLHKLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTDFLRRYPQVLHASVVVDLAPVVKYLQGMDIKPNVVPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVARREIGGVLTRYPEILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKRPHILGFWLGDRVKPNVEALLEFDVRKESLASVVAQYPEILGIELKPKLLSQRSLLNSSIDVDPKDFGRVVEKMPQIVSLNQSPLLKHVDFLKDCGFSLPQVRKMVVGCPQLLALNVDIMKLSFDYFQTEMGMDLDDLVAFPAFFTYGLESTIRPRHRAVVKKGLKCSLGWLLNCSDEKFEERMNYDTINMEEMEMEPSFNMSTLLEPRGDESSSEDEEDSDDEYA* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01176 524 MobiDBLite consensus disorder prediction 510 524 - -
Eupl07g01176 524 Gene3D Transcription termination factor 3, mitochondrial 270 487 IPR038538 -
Eupl07g01176 524 Gene3D Transcription termination factor 3, mitochondrial 108 199 IPR038538 -
Eupl07g01176 524 SMART mt_12 401 432 IPR003690 GO:0003690|GO:0006355
Eupl07g01176 524 SMART mt_12 185 216 IPR003690 GO:0003690|GO:0006355
Eupl07g01176 524 SMART mt_12 257 288 IPR003690 GO:0003690|GO:0006355
Eupl07g01176 524 SMART mt_12 221 252 IPR003690 GO:0003690|GO:0006355
Eupl07g01176 524 SMART mt_12 366 396 IPR003690 GO:0003690|GO:0006355
Eupl07g01176 524 SMART mt_12 86 119 IPR003690 GO:0003690|GO:0006355
Eupl07g01176 524 SMART mt_12 329 361 IPR003690 GO:0003690|GO:0006355
Eupl07g01176 524 SMART mt_12 433 464 IPR003690 GO:0003690|GO:0006355
Eupl07g01176 524 SMART mt_12 293 324 IPR003690 GO:0003690|GO:0006355
Eupl07g01176 524 SMART mt_12 149 180 IPR003690 GO:0003690|GO:0006355
Eupl07g01176 524 FunFam Transcription termination factor mterf4, chloroplastic 135 273 - -
Eupl07g01176 524 MobiDBLite consensus disorder prediction 67 92 - -
Eupl07g01176 524 Pfam mTERF 171 479 IPR003690 GO:0003690|GO:0006355
Eupl07g01176 524 MobiDBLite consensus disorder prediction 498 524 - -
Eupl07g01176 524 FunFam Transcription termination factor MTERF4, chloroplastic 274 487 - -
Eupl07g01176 524 PANTHER CGI-12 PROTEIN-RELATED 170 302 IPR003690 GO:0003690|GO:0006355
Eupl07g01176 524 MobiDBLite consensus disorder prediction 67 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01176 Eupl-Chr7 31834392 31835966 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Eupl07g01176 mTERF 1.6e-105 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01176 K15031 - nnu:104613142 853.973