Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01115 ATGGGAGGGAAAAGTGGCCAGGAGTTCCCTGCGGAATTAATGTCATTCACTTATGGTGGCTTGATTGCTAAACAAGCAAAGGGTGACCCACCCAGAGATTTTTCAAACCAGCATGTTGTCGTAGCAGCTGAGAGGAATGAAAAATGTCCTATTGTACAACCTCTTCTCTCTCAGATTCATCAGGAACGAACATCTCACAATCATTTTAGTTTTCTACCAACAAGTTCAACAGTAATCCGTGCTGTTCCTGGTAGAGATATACCAAAAGGCCTTCTTGTAACAGTTGGCAGCAGAGAAACTGTAAAGTGGATTCCTGAATTCCAAAGGGAAATATTATATAACAATTCAGGGAAGGCAATTAATTCTGACCCTACTGATTCTTCTTGTGATATGGATGCTTCTAAAACAAAGCCATCTATCCATATGTTCAACAGCAACAATCTCAAAGCTTCGATAAATCCCCCATGGCTTTTGCATTCCAATCAATATGACATGCCAGATGGAGAGAATTGTGATATTCCAATGGCAAGACCTTTGAGCCCACGTGGCGAAGGAGAGTCACAGAACAAGTTCATGAGTACAGAAAACCAGATATGTGCACAAAATCATCCTTCAACAACCCCAGAATCAATTGAAGAGGGTTCTAATGTTTCGCAACTTCCAACAGTAACAGTTGCTGTTCCGGGTTTCCCTTCCAGACAAGGAGCCACTGCCCGAAGCAATATGGCTGGTCGTCTCCGCAGAGCAAGGATTGCTGAAGGATTCAAAGCATTGCAAGAAATTATGCCACATTCTGAAGAGGATAATAAAGAAGCTGTCCTGGATGATATCATTGACTATGTCAAGTATTTGCAGCTCCAAATTAAAGCCTTGAGTCAAAGCAGATTGGGTGGTGAAGAACCTGGTGATCCTTTAATTCAATTCGAGTGGGTGCACAATGACAAGGGATTTGGCCACTACTGGCTCCATAAACAGATGCTGAGCGAACCTCTTGAAGAGATGATCGGACGGTTGATGGAGGTGAACATGCCGGCAGCAACCTACCTGTTGGAGAGCAAGGGCCTGCATGTGATGCCTATGGCTTTGGCAGAAGGGCTATTTCAAGCCAATTAG 1113 0.4367 MGGKSGQEFPAELMSFTYGGLIAKQAKGDPPRDFSNQHVVVAAERNEKCPIVQPLLSQIHQERTSHNHFSFLPTSSTVIRAVPGRDIPKGLLVTVGSRETVKWIPEFQREILYNNSGKAINSDPTDSSCDMDASKTKPSIHMFNSNNLKASINPPWLLHSNQYDMPDGENCDIPMARPLSPRGEGESQNKFMSTENQICAQNHPSTTPESIEEGSNVSQLPTVTVAVPGFPSRQGATARSNMAGRLRRARIAEGFKALQEIMPHSEEDNKEAVLDDIIDYVKYLQLQIKALSQSRLGGEEPGDPLIQFEWVHNDKGFGHYWLHKQMLSEPLEEMIGRLMEVNMPAATYLLESKGLHVMPMALAEGLFQAN* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01115 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 235 284 IPR011598 GO:0046983
Eupl07g01115 370 CDD bHLH_AtbHLH_like 245 292 IPR045239 -
Eupl07g01115 370 SMART finulus 241 290 IPR011598 GO:0046983
Eupl07g01115 370 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 142 362 - -
Eupl07g01115 370 Gene3D - 235 299 IPR036638 GO:0046983
Eupl07g01115 370 Pfam Helix-loop-helix DNA-binding domain 239 285 IPR011598 GO:0046983
Eupl07g01115 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 234 295 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01115 Eupl-Chr7 30977987 30983765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01115 228 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 41.259 1.60e-24 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl07g01115 HLH 8.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01115 - - nnu:104612600 282.337