Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01114 ATGGGGCTCTCATGGAGTAAAAGAAGAAACAACAATATCTACCAAAACACATCTCCATCTCTACGCATCTCTTCTTATCCTTCAGACCCTTCTCCTCTTCCATCTTCTTCTTCGAACCCTCCTCTTCCTTCTTCTTCTTCAAATCCACCTCTTCCTCCACCAAACTATGTTTTCGCTGCGAACGCTCCCTATCCTGCGCCCCCATACCCACCTCAGAATTCTTATCCTACACCCTATCCTCCTCTCCCGCCTCACCCGTCTTACAATCAATATTACCCAATGGGTCGATCGAATTACCACCCTTACTATAATCGGCCTTCGATGGTTCCGCCGCAGCCAACGCCTCTACCTTATATTGAACACCAGAAGGCGAAGAAGATCAGGAGCGATTTGAATGTACATAAGGACACAATAAGGATTGAAGTCGACGAGAACAACCCGGAATATCATTTGGTTTCTTTCACTTTAGATGCCATGGTTGATGGGAGTATCACAATATTTTACTTTGCCAAGGAAGGGACCAACTGTCAGTTTACTCCACTATATCCTGAAGCCCATAGGCCCATGAAAGTCTCCTTTCAGAAAGGATTGGGCCAGAAATTCCGTCAGCCTTCAGGAACCGGCATTGACCTAGGCTTCTTTGAGTTGGATGATCTCTCGAAACCATCACCAAGCGAAGATGTATTCCCACTTGTGATCTTTGCCGAAGCATGCTCACCACCTCTGCCTACAGATGAACAGAATGATCAGCCTTTGCCTACTACATCTCATGCACAGATAACCCAAGCCATCCTAGAGCACAACAATGTAGGCCCTTTCCAGGTGAAAGTAATAAAGCAAATATTGTGGGTTGATGAGGTTCGCTATGAGTTGCGTGAGATTTATGGAATTGGCAACTCAGCTGAAGCAGGCTTCGATGACAATGACCCAGGGAAAGAGTGTGTGATTTGCATGTCCGAACCGAAGGACACAGCTGTGATGCCTTGTCGACATATGTGTATGTGCAGTGAGTGTGCGAAAGAATTGAGGCTTCAAACAAATAAGTGTCCAATATGTCGCCAGCCCATTGAGCAACTTATAGAGATCAATTCTAGTAAAGGTGATCAGTGA 1110 0.4568 MGLSWSKRRNNNIYQNTSPSLRISSYPSDPSPLPSSSSNPPLPSSSSNPPLPPPNYVFAANAPYPAPPYPPQNSYPTPYPPLPPHPSYNQYYPMGRSNYHPYYNRPSMVPPQPTPLPYIEHQKAKKIRSDLNVHKDTIRIEVDENNPEYHLVSFTLDAMVDGSITIFYFAKEGTNCQFTPLYPEAHRPMKVSFQKGLGQKFRQPSGTGIDLGFFELDDLSKPSPSEDVFPLVIFAEACSPPLPTDEQNDQPLPTTSHAQITQAILEHNNVGPFQVKVIKQILWVDEVRYELREIYGIGNSAEAGFDDNDPGKECVICMSEPKDTAVMPCRHMCMCSECAKELRLQTNKCPICRQPIEQLIEINSSKGDQ* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01114 369 SMART ring_2 314 352 IPR001841 -
Eupl07g01114 369 MobiDBLite consensus disorder prediction 33 54 - -
Eupl07g01114 369 Pfam Zinc finger, C3HC4 type (RING finger) 312 358 - -
Eupl07g01114 369 MobiDBLite consensus disorder prediction 1 54 - -
Eupl07g01114 369 FunFam probable E3 ubiquitin-protein ligase LOG2 298 363 - -
Eupl07g01114 369 MobiDBLite consensus disorder prediction 1 32 - -
Eupl07g01114 369 SUPERFAMILY RING/U-box 313 359 - -
Eupl07g01114 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 363 IPR013083 -
Eupl07g01114 369 ProSiteProfiles Zinc finger RING-type profile. 314 353 IPR001841 -
Eupl07g01114 369 CDD mRING-HC-C3HC5_MGRN1-like 312 353 IPR045195 -
Eupl07g01114 369 PANTHER MAHOGUNIN 75 364 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01114 Eupl-Chr7 30961933 30972948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01114 79 369 C3H Transcription Factor Family AT3G06140 55.068 1.67e-107 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01114 - - nnu:104596432 438.343