Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01100 ATGGAGTTGGAAGTTTTGCTCAAGAAAGAGATGGAGATGTTTAGGATTCCAATGGTACTACTGTTTATGTTTCATCTCTTGATGGGTTCTTCTTCTTCTTCTTCTTTTCAAGTCATTAATGGGAGATGTGATTTGATTTCAAGTGAGTTAAGGAACAATGTTACTAGGGATCTGTATGGGATTGAAATGGGTTTGAAGGTATTGATGAGAGAGGAGGAACTGGTTGATGATAGGGAGGAGTTTGATCGAGTTCCTATGATTTTGCATCAGTTTTTATCGTCGAATTATCGACAGGCTGAGAGGAGCTTAGAGGGTATAGTTCGCCGTCTTTCGACGTGCTCGGGGACTGATCTCAACAGTTTTGCTTACATACCGGAATCGGTGATAGATTTCTCTAAGCACGCATTAATTCAAGCTAAACGAGCTCAAATCTCGATTCAACGACTAATCCGGTGCAACGAGAACATCACAACCGTTGATCACAATCAACTTTTTGAATCCTCAGATGAAAAAAGGCACAATTGTTTAGTTGATGGAACCAAATGCCAATACTCACCTTGTGCACAAGGCAACAAACTCCCAATATGTGCAGTAGGCTTCGCTACAGGGGTCACTGGTGGTGCAGGTGGGTCATACTATATTGTAACCCGTTCAGATGACAATGATCCAAAAAATCCAGCTCCGGGTACTCTTCGTCACGCCGTTGATTTTGCGGGGAAAGACAATGGAGGCTCTTGGATCATATTTAAAGAGAACATGGTGATTAGGCTTAAGGAAAAGCTATGGATAAATTCAAACACAACAATTGATGGAAGAGGGGTAAATGTGACTATAATTGGGAAAGGCCTGGTTCTAGCAAGGGTTCAGAATGTGATTTTGCATAATTTTGAGGTTGTTTCAACTGGGGAAAGCGATACCGTCCATGTGTTTGATGGGACCCATCGAGTATGGATCGATCATCTAACTTCTAAAGATGCACATTTGGGATTAGTTACGGTTCTTCAAGGATCGACGGATGTGACTATCTCTAATTGCTATCTTTCGAACCACAACTTCAATATGCTATTGGGAGCATCTGATCAAGATACCGTTGATCAAATACTTAGGGTTACGGTCTATAGGAATTGGTTCGAGTCATCGAACCAAAGGATGCCACATTGCAGGTGGGGTTATTGCCATGTAGTGAACAACTACTATAGAGACTGGCATTACTATGCAATAGGAGGAAGAGTGCACGCAAAGATCCTTTCAGAGCTAAATGTGTTCGAGCCAGGGCAGAGGCAAGAGGTGACCCCATGGCACGACCGATTCACCTCCGATTTAACCCCAACCATAGAGTCATCCAAAGACCTTTTGCTCAATGGGTCTACCTTTCACCAGTTCTTAATGTATGGCACCTTGAGCTCTCCCGAGGACCAATTCCCAATGTACAAGCTTCCAACTAGGCCCACCAACTTCTTAACAGGCCTAGTAACCAAGTGTTCAGGAGTCCTCTTTGGACAAAAACTAGGAGATTGCTTGGCAACCCCATGA 1533 0.4318 MELEVLLKKEMEMFRIPMVLLFMFHLLMGSSSSSSFQVINGRCDLISSELRNNVTRDLYGIEMGLKVLMREEELVDDREEFDRVPMILHQFLSSNYRQAERSLEGIVRRLSTCSGTDLNSFAYIPESVIDFSKHALIQAKRAQISIQRLIRCNENITTVDHNQLFESSDEKRHNCLVDGTKCQYSPCAQGNKLPICAVGFATGVTGGAGGSYYIVTRSDDNDPKNPAPGTLRHAVDFAGKDNGGSWIIFKENMVIRLKEKLWINSNTTIDGRGVNVTIIGKGLVLARVQNVILHNFEVVSTGESDTVHVFDGTHRVWIDHLTSKDAHLGLVTVLQGSTDVTISNCYLSNHNFNMLLGASDQDTVDQILRVTVYRNWFESSNQRMPHCRWGYCHVVNNYYRDWHYYAIGGRVHAKILSELNVFEPGQRQEVTPWHDRFTSDLTPTIESSKDLLLNGSTFHQFLMYGTLSSPEDQFPMYKLPTRPTNFLTGLVTKCSGVLFGQKLGDCLATP* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01100 510 SUPERFAMILY Pectin lyase-like 196 504 IPR011050 -
Eupl07g01100 510 PRINTS Pollen allergen Amb family signature 220 245 IPR018082 -
Eupl07g01100 510 PRINTS Pollen allergen Amb family signature 196 213 IPR018082 -
Eupl07g01100 510 PRINTS Pollen allergen Amb family signature 405 424 IPR018082 -
Eupl07g01100 510 PRINTS Pollen allergen Amb family signature 383 402 IPR018082 -
Eupl07g01100 510 SMART amb_all 252 428 IPR002022 -
Eupl07g01100 510 Gene3D - 174 496 IPR012334 -
Eupl07g01100 510 PANTHER PECTATE LYASE 18-RELATED 164 498 IPR045032 GO:0030570
Eupl07g01100 510 Pfam Pectate lyase 258 422 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01100 Eupl-Chr7 30787603 30790481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01100 193 487 Polysaccharide Lyase AT5G55720 40.312 8.07e-59 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01100 K01728 - psom:113336757 695.656