Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01077 ATGGGTCGCAGGAAGATTGCAATCAAGAAGATAGAGTTCTCAGCAAACCGACAGGTTACCTTTTCGAAACGCCGTGCTGGTCTTTTCAAGAAGGCGAGCGAGCTATGCATTCTTTGTGGTGCGGAGATTGCCATTATTGTGTTTTCCCCGGCTGGGAAGCCCTTCTCCTTTGGCCACCCATGTGTCGACTCAGTGATAGACCGGTTTCTAAATAAACGAGACATCGGTGCAAGTGCATATGCAGGTTCAGGTTCAGGTTCAGGTGCAGGTGCAGGTGCAGGTGCAGGAGAGTATCATCATCAACAGTACGTGGAGGTTCTTAGTCAATTAGAAGCAGAGAAGAAGCGAGGTGAAGCGTTAGAGCAGTTGAGGAACGCGGAGTTGGGTCAGTTTTGGTGGGATGCAGCGATCGACGATCTTGGATTGAATGAGCTCGAGCAAATGAGAGCGTCAATGGAAGAGATGAAGAAGAAGGTAGAGAAGCGAGCTGATGAGCTACTGATGGGACTGGGAGGTTCTTCTCCATCGTCGTTCTTGGCAGTTAATCCGGTTGGGATGGTAGATCCCTTTATAACCCAAACAACACAGTATGATACTTCTGTTGTTCCCTATGATTTTGGTTTTCAAGTTGGGCTTCTTTGA 642 0.4813 MGRRKIAIKKIEFSANRQVTFSKRRAGLFKKASELCILCGAEIAIIVFSPAGKPFSFGHPCVDSVIDRFLNKRDIGASAYAGSGSGSGAGAGAGAGEYHHQQYVEVLSQLEAEKKRGEALEQLRNAELGQFWWDAAIDDLGLNELEQMRASMEEMKKKVEKRADELLMGLGGSSPSSFLAVNPVGMVDPFITQTTQYDTSVVPYDFGFQVGLL* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01077 213 PANTHER MADS BOX PROTEIN 3 162 - -
Eupl07g01077 213 Coils Coil 142 165 - -
Eupl07g01077 213 Gene3D - 14 81 IPR036879 GO:0003677|GO:0046983
Eupl07g01077 213 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl07g01077 213 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Eupl07g01077 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl07g01077 213 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl07g01077 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl07g01077 213 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl07g01077 213 Gene3D - 100 169 - -
Eupl07g01077 213 FunFam Agamous-like MADS-box protein AGL62 14 78 - -
Eupl07g01077 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl07g01077 213 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01077 Eupl-Chr7 30480509 30481162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01077 1 159 Type I MADS-box Gene Family AT2G24840 46.296 1.43e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl07g01077 SRF-TF 8.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01077 - - nnu:104611768 210.305