Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01076 ATGGCCGATTTCGATTCTACGGCGGAGAATCCGGTCATGACGGTGGCAGCATCTTCAGGCGCTGCTCAAGACGCTTGGGAAGATGCCTGTAGTATCTGTCTCGAGTCCTTCTCATCCGAAGATCCTGCAACTGTCACCTGTTGCAAACATGAATATCATCTCCAATGTATCCTTGAATGGTCCCAAAGAAGCAAAGAGTGTCCGATATGCTGGCAGTTCCTGGTCTTAAGGGACCCTGCTAGCCAAGAGCTTCTTGCAGCAGTGGAGATTGAAAGAAACTCAAGATCGAGGCGCAGATCTTCCAATACATCCACATTTCCTCGCATCCCCCCGGAGGACTTCGAATTTGACCATGTTGCAACATACACAGATGACTTGGATTTCGATGAGCGTATCATGCAGCATCTAGCAGCTGCTGCCATGGGCAGGACTCATCATTTTAGCAGGAGGGAGAGGCATAGATCTGGGTTGGGTCCCTCCCAGTTCCTTGTTTTTGCAGCTCCTTCAAATGGATCTGATGTACAGCAAACGTATACAACTGCACCGATAGAGAGTCAAAGTTCAGGCAATTCTGCATCGCCTGAGAGTAATTCTCCAACAACGGTCATGTCTTCTGCCATCAATGATCAATCTCGGTCATCTGTGCGTTCCCCTATAAACATGGGCTCAAACATTACGGACACTAGACATGATGCTTTCAGACCTGGAATTCTTGCTAGCCCGACACCTCCAGGCAGTCCAAGGAGGTCACGACCATCAGAGTTACTCTCTTTCTCAGAGTCTCTAAAATCTAGATTTTCTGCTGCCTCAGCCCGATATAAAGAGTCGATCTCGAAAAGTACGCGGGGTTTTAAGGAGAAGCTACTGGCACGGAATAACTCAGTTAAGGAGCTAAGCAAAGAAGTTCAGCGCGAGGTTACTGCAGGTATTGCTGGTGTTGCTCGAATGATGGAACGCTTAGATCCTACCTCAAAGCGAACTGGAGGTTCTGGTCCTGTTTCCATTGGTACTGAGGGGACCTCTGACTTATCCCACAATGGAAAAGGTGTGCAAGAGAACCTGATTACTCAATCTCCTAATAGGGATGATGGGGAGCCTGCACATGGTACAAGTTCAGACACACCCATCCATGTTTCTGGCAGCTTTTCTTCTGTCCCAGGTCACATGGAAGTTACTCGTGTACAGGATGTTCTCTGA 1197 0.4829 MADFDSTAENPVMTVAASSGAAQDAWEDACSICLESFSSEDPATVTCCKHEYHLQCILEWSQRSKECPICWQFLVLRDPASQELLAAVEIERNSRSRRRSSNTSTFPRIPPEDFEFDHVATYTDDLDFDERIMQHLAAAAMGRTHHFSRRERHRSGLGPSQFLVFAAPSNGSDVQQTYTTAPIESQSSGNSASPESNSPTTVMSSAINDQSRSSVRSPINMGSNITDTRHDAFRPGILASPTPPGSPRRSRPSELLSFSESLKSRFSAASARYKESISKSTRGFKEKLLARNNSVKELSKEVQREVTAGIAGVARMMERLDPTSKRTGGSGPVSIGTEGTSDLSHNGKGVQENLITQSPNRDDGEPAHGTSSDTPIHVSGSFSSVPGHMEVTRVQDVL* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01076 398 MobiDBLite consensus disorder prediction 182 255 - -
Eupl07g01076 398 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 19 79 - -
Eupl07g01076 398 MobiDBLite consensus disorder prediction 319 398 - -
Eupl07g01076 398 SUPERFAMILY RING/U-box 27 77 - -
Eupl07g01076 398 Pfam Ring finger domain 29 70 IPR001841 -
Eupl07g01076 398 MobiDBLite consensus disorder prediction 327 365 - -
Eupl07g01076 398 Coils Coil 285 305 - -
Eupl07g01076 398 ProSiteProfiles Zinc finger RING-type profile. 30 70 IPR001841 -
Eupl07g01076 398 SMART ring_2 30 70 IPR001841 -
Eupl07g01076 398 MobiDBLite consensus disorder prediction 372 388 - -
Eupl07g01076 398 MobiDBLite consensus disorder prediction 182 227 - -
Eupl07g01076 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 74 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01076 Eupl-Chr7 30460044 30474957 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01076 24 78 C3H Transcription Factor Family AT4G00335 49.091 9.81e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g01076 K19043 - nnu:104586734 460.299