Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g01075 ATGGCCTCGTTTAGCAGTCCTCATCTTCTTTCTCTTACACGCGTTTGCTCCCTGAATACCAGTCTCCCTCTTCTGTTCTCTGCAACACAAAACTTTAACCCTACAAACCGAGTTCTCAACTCTACTTCTTCCAGGTCTTCACATGCCCCCCTCAATGTTTCCTCTACATCCAACACAGCCGCGATTGCAGAGAGAGCTACGACGCTCCGAGAGATCTGCGAAGGTCGTGTCCCCGAACATATACTGCAAAGGGCCGAGGAGGTTGGATTTGTTGTACCAACAGATGTGCAGCGGCAATCTTTACCGACATTACTATCTGGACGGGATTGCATATTACATGCTCAGACAGGTTCTGGGAAGACCCTGGCGTACCTACTACTAATATTTTCACTTATAAATGTTCAAAGATCTACTGTGCAAGCAGTGATCGTGGTGCCCACCAGAGAACTTGGCATGCAAGTTACAAAAGTTGCTCGTATATTGGCTGCAAAACATCTGGAACCTGACTTGGAGCAAAAGAACTGCACTGTTATGGCTCTTTTAGATGGAGGGATGTTGAGACGACATAAGAGTTGGCTAAAGGCGGAGCCCCCTACAATAGTGGTTGCAACTATCGGGAGTTTGTGCCATATGCTTGAGAAGCAAATTTTTAAGCTTGAAGCAATGAGGGTGCTTGTAATTGATGAGGTTGATTTCATGTTCAATTCATCAAAGCAAGTATATTCTCTTCGGAAGCTTTTGACGTCATATTCTTCAATAAATAACCGTCAGACTGTTTTTGCTAGTGCATCCATACCCCAGCACAGGCGGTTTCTATATGATTGTATACAGCAGAAGTGGACCAAGAGTGATGTGGTTCATTTCCATGTCAATTCAGTCGAGCCCATGCCTTCATGCCTATGTCACAGATTTGTGATTTGTGATAAAAAAGAAAGGCTGCAAACTTTGCTATCCTTACTACGGACTGATGCACCTAAATCTGGCATAATTTTCATCGCTGAGCAGTCCGAGAAGTCAAAGAAGGCTGGAAATGCTCCTTCAACAACCCTCGTCGTTGATTTCCTGAGAACCTTGTATGGTGAATGTTCAGCTATCCTTCTTCTGGAGGAAGATATGAATTTCAATTTAAGAGCAGCCTCACTATCTGAAGTGAGGCAAGGTGGGGCCTGTCTTCTAGTCGCAACAGACATAGCAGCTAGAGGGGTTGACCTGCCTGAGACAACTCATATATACAACTTTGATCTGCCAAGAACTGCAGTAGATTATCTTCACCGCGCTGGAAGGACGGGTAGGAAACCGTTCTCAGATGAGAAGTGCACTGTCACCAATATGATAACATCCGAGGAGCGGTTTGCATTGCAGAGATTCGAAAATGAATTGATGTTTCACTGTGAAGAGTTGTCTTTATAG 1410 0.4461 MASFSSPHLLSLTRVCSLNTSLPLLFSATQNFNPTNRVLNSTSSRSSHAPLNVSSTSNTAAIAERATTLREICEGRVPEHILQRAEEVGFVVPTDVQRQSLPTLLSGRDCILHAQTGSGKTLAYLLLIFSLINVQRSTVQAVIVVPTRELGMQVTKVARILAAKHLEPDLEQKNCTVMALLDGGMLRRHKSWLKAEPPTIVVATIGSLCHMLEKQIFKLEAMRVLVIDEVDFMFNSSKQVYSLRKLLTSYSSINNRQTVFASASIPQHRRFLYDCIQQKWTKSDVVHFHVNSVEPMPSCLCHRFVICDKKERLQTLLSLLRTDAPKSGIIFIAEQSEKSKKAGNAPSTTLVVDFLRTLYGECSAILLLEEDMNFNLRAASLSEVRQGGACLLVATDIAARGVDLPETTHIYNFDLPRTAVDYLHRAGRTGRKPFSDEKCTVTNMITSEERFALQRFENELMFHCEELSL* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g01075 469 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 101 283 IPR014001 -
Eupl07g01075 469 Gene3D - 24 280 IPR027417 -
Eupl07g01075 469 Pfam DEAD/DEAH box helicase 94 267 IPR011545 GO:0003676|GO:0005524
Eupl07g01075 469 CDD SF2_C_DEAD 302 431 - -
Eupl07g01075 469 CDD DEADc 81 267 - -
Eupl07g01075 469 SMART ultradead3 89 288 IPR014001 -
Eupl07g01075 469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 447 IPR027417 -
Eupl07g01075 469 Gene3D - 296 468 IPR027417 -
Eupl07g01075 469 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 54 460 - -
Eupl07g01075 469 SMART helicmild6 349 433 IPR001650 -
Eupl07g01075 469 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 312 469 IPR001650 -
Eupl07g01075 469 Pfam Helicase conserved C-terminal domain 312 431 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g01075 Eupl-Chr7 30442160 30455624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g01075 67 458 Eukaryotic Initiation Factors Gene Family AT1G72730 26.585 1.69e-34 132