Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00939 ATGGATACACCGGAGAGGAACCAGATCGGGACTCCGATTTCTAAATTCGAGGATTCTCCCGTCTTTAACTATATCAACAGTCTTTCTCCTATTAAGCCAGTTAAGTCTATACACATTGCTCAGACCTTCAACTCGCTTAGTTTTGCATCTCTGCCATCCGTGTTTACTTCACCACATGTTAGTTCTCAGAAAGAATCCAGATTCTTGAGAAGGCATTACTTATCAGACTCTTCAAAACCTCAAGTTTCTTCTGACAATGGAAATGAAGGCAGAATGAGTTTGGGTGTTTTGGATGCCGTTCAGGTGTCTGATTACTCTGCTGATCCACAGGAAACTTTTGACCCAGGGAGTTCTATTAGAGAAGTTATTGTTGAGCCACCTAATGAGAACGCAAAGCTTGCTATTGAATTGCCACGGACCTTGAAGTATGATTGTGGTAGCCCCAACAGTAACCTTACTTCTTGCCAAGGTTTAAAGACAGATCCCATGCCAGAAATGTCTGGCACACCGGCAACACTTGTTCAATTTGCTCAAGAGGTCTCAGTTGAAAGGCGTCATTTGTTTGAAAGTGAAGTAGAGTTGCAGGGGATATGTCAGCTTGAGAAAACTAAAGAAGGAGCAGTATGTGATTGGGAGAATTTGATTTCTGAAGCTGCTGGCCTGTTAATTTTTGATTCATCCAATAATGCCGAGGCTTCTAAGGAGCAGGATCAGAAATTAGTGGATCCTGATACTAGTTCCTTTACATCTCTCGTGTTGAAACTCCCGCAAGATGGTACTGATGATTTACAGAACACCCAACCTGTTGTTCAGGTAGGTTTTTGTGAGCAACATGAAATGGAAGATCCTGCAACTCAATCAGGAGAAGTTGGGGAGCAGAAGGAAACAGATCACACGCCACATATACCTTCAAGTACTTTTCTGATTAAGCAAGGGGTTAACTTTCCAAGTGAGAAAATGGATGACAAAGCCGGAAATTATGCTCCATTTGGTTGCCAGCAGCAGCGTGGCATGCGAAGGCGTTGCCTAGTTTTTGAGATGACAGGAGTTCATAAAAAGAACTTGGAGGATGATTCTAATAGTAGTTCTTCAATCTCATCTCAATCTGATGGAAAATCTGTTTCTGATGATAAGCAATTGGTTCCTGTCAAGCCTGGAATGTCTTCTTCACCATGCGTGCTACCTGGTATTGGTTTGCACTTGAATGCTCTTGCAGTTACTACAAAGGACCCTAGAGTTGTCAAGCATGAGACACTGGCTTCTGGAAGGCAATTAATAAGCATGCCAACTTCTATTGCCTCTTTTCATTCTCTATCTGATAAAAAGCCTCTAAATAAATCCCTGGCTCTGAACTCTAAGGACAGAGACATGGGCCCATCTGGCAATGAAGTTCAGGTTATGCTGGATGCTTCTCGGGCATCTGTGTCTGGAGGTGGCGAAGAGCTCAGTGAGAGTAGCCCCAAGAAGAAGAGGCGCAGGTTGGAACATGCTGGAGAAAGTGAGGCCTGCAAGCGTTGTAACTGTAAAAAGTCGAAATGCTTGAAGCTTTACTGTGAATGCTTTGCTGCGGGTGTCTACTGCGTGGAGCCTTGCTCATGTCAGGAATGCTTTAACAAGCCTGTTCATGAAGATACTGTTCTGGCAACTCGCAAACAGATAGAATCTCGCAACCCACTTGCATTTGCCCCTAAAGTGATTAGGAGCTCCGAGTCTGTTCCAGAGACTGGGGAAGAATCTAACAAAACTCCAGCTTCAGCTCGGCATAAAAGAGGATGCAACTGCAAGAAATCAAGTTGCCTCAAGAAGTACTGTGAATGCTATCAGGGTGGCGTTGGATGCTCCATTAACTGCAGATGTGAAGGGTGTAAGAATGCATTTGGTAGGAAAGATGGATCTGCTCCAATTGGAACAGAAGAAGCTGAGCCAGAAGAGGAAGGAGCAGAAACCTGTGAAAATAATGATATGGATAAGAGTTTACAGAATAATGACGTCCAGAATGGTGAAGATCATTTTTTTGATCATGTTCTGCCTATAACGCCTCTCCAGATGTGCAGACCGTCGGTTCAGTTGCCGTTTTCCTCCAGTGGGAAGCCACCACGATCTTCTCTTCTCCCTGTTGGATCATCTCCTCAGTTGCATGCCAGCCAAACATCGGATTTTCTGCACTCTCAATCCAAGTTTGAGAAGCATCTCCAGATCATTCCGGAAGATGAAACCCCTGAAATTCTAAGAGGCAATTGCTCACCTATCAGCGGCGTGAAGATTGCTTCTCCAAATCGTAAGAGGGTCTCACCTCCTCACAATGACTTTGGTTTGTCTCCTGGTCGTCGGAGTAGCCGGAAGTTGGTACTGCAATCTATCCCCCCGTTCCCATCTCTCACTCACCACGAAACCAGTGATTTCCGGTGA 2409 0.4462 MDTPERNQIGTPISKFEDSPVFNYINSLSPIKPVKSIHIAQTFNSLSFASLPSVFTSPHVSSQKESRFLRRHYLSDSSKPQVSSDNGNEGRMSLGVLDAVQVSDYSADPQETFDPGSSIREVIVEPPNENAKLAIELPRTLKYDCGSPNSNLTSCQGLKTDPMPEMSGTPATLVQFAQEVSVERRHLFESEVELQGICQLEKTKEGAVCDWENLISEAAGLLIFDSSNNAEASKEQDQKLVDPDTSSFTSLVLKLPQDGTDDLQNTQPVVQVGFCEQHEMEDPATQSGEVGEQKETDHTPHIPSSTFLIKQGVNFPSEKMDDKAGNYAPFGCQQQRGMRRRCLVFEMTGVHKKNLEDDSNSSSSISSQSDGKSVSDDKQLVPVKPGMSSSPCVLPGIGLHLNALAVTTKDPRVVKHETLASGRQLISMPTSIASFHSLSDKKPLNKSLALNSKDRDMGPSGNEVQVMLDASRASVSGGGEELSESSPKKKRRRLEHAGESEACKRCNCKKSKCLKLYCECFAAGVYCVEPCSCQECFNKPVHEDTVLATRKQIESRNPLAFAPKVIRSSESVPETGEESNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCEGCKNAFGRKDGSAPIGTEEAEPEEEGAETCENNDMDKSLQNNDVQNGEDHFFDHVLPITPLQMCRPSVQLPFSSSGKPPRSSLLPVGSSPQLHASQTSDFLHSQSKFEKHLQIIPEDETPEILRGNCSPISGVKIASPNRKRVSPPHNDFGLSPGRRSSRKLVLQSIPPFPSLTHHETSDFR* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00939 802 MobiDBLite consensus disorder prediction 354 387 - -
Eupl07g00939 802 MobiDBLite consensus disorder prediction 566 586 - -
Eupl07g00939 802 MobiDBLite consensus disorder prediction 473 494 - -
Eupl07g00939 802 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 504 539 IPR005172 -
Eupl07g00939 802 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 590 625 IPR005172 -
Eupl07g00939 802 SMART CXC_2 501 542 IPR033467 -
Eupl07g00939 802 SMART CXC_2 587 628 IPR033467 -
Eupl07g00939 802 MobiDBLite consensus disorder prediction 359 375 - -
Eupl07g00939 802 MobiDBLite consensus disorder prediction 689 721 - -
Eupl07g00939 802 MobiDBLite consensus disorder prediction 753 802 - -
Eupl07g00939 802 ProSiteProfiles CRC domain profile. 502 627 IPR005172 -
Eupl07g00939 802 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 796 IPR044522 GO:0003700
Eupl07g00939 802 MobiDBLite consensus disorder prediction 630 652 - -
Eupl07g00939 802 MobiDBLite consensus disorder prediction 280 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00939 Eupl-Chr7 28148342 28157384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00939 1 793 CPP Transcription Factor Family AT3G22780 40.786 1.18e-144 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Eupl07g00939 TCR 2.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00939 - - nnu:104596593 1102.43