Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00912 ATGAGCATGTTACCTGCAACCATGTCAAATTCAACTTCTTTGTCTGAGGAAGCTAGTGTGTCTTCCGGTACTAGAGTTCAGGACTTTGGTAGCAGCTTAAATCCCATGTTCTCAGCCATCTCTCCTCAGCAGCAACAGAAGATCAAAAAGAAAAGAAACCTCCCTGGAAATCCAGACCCAGACGCCGAAGTGATTGCTTTATCCCCAAAGACATTAATGGCTACAAATAGGTTTGTGTGTGAGATCTGCAACAAGGGTTTTCAGAGAGATCAGAACCTACAGCTGCACAGGAGAGGCCATAACCTTCCATGGAAGCTGAAGCAGAGAACCAGTAAAGACATCATAAAGAGAGTCTATGTGTGCCCAGAGCCCTCATGTGTTCATCACAACCCTTCTAGGGCTCTTGGTGATCTCACGGGAATCAAAAAACACTTCTGTAGAAAACATGGGGAGAAAAAGTGGAAGTGTGAGAAGTGTTCAAAGAGATATGCAGTTCAATCAGATTGGAAGGCTCATTCAAAAACATGTGGAACAAGAGAATACAGATGTGACTGTGGAACCCTTTTCTCCAGGAAGGACAGCTTCATCACCCACAGAGCCTTCTGTGATGCTTTAGCCGAAGAGAGTGCAAGACTCTCCACCAACCCATTAACAACAACAACAAACCCAGTAGACCACACTCTCCATCTCCACCCACAAAACCCATCTACTCTCTTCCCCTTCTCAACCCAACAACAACAACAACACTTCCTAAACCCACCAAACCAAATCTCCCTCACCTCATGGGACCCACCTCAAAACCCGAATTCTACCTCCTCAAACCCAATTCAAATCAAGCATGAAACTCATCATCAAATCCCAAACATCACTCCTTTTTTCCAAGAATCATCTCACAAGCAGTTCACCAAGCCACCCTTTCTTCAACACCTTCATATGACGACCTCCAACACCAACACAGCCCATATGTCAGCCACTGCACTGCTTCAAAAAGCTGCTCACGTGGGTGCAGCGGCCATTTCAGGCGCCACACAAGCTCAATCAGTGGGTCACATGTCATCTTCCATGACTCAGTTAGAGATGAACGAATTTGGAACAATGAGTCACATGGGCACCGGAATCTCGTCGGATTATCTAGGATTCCATTCAGGAAATGTTGCCACGTGGCAGAAAAGTGACCGCTTGACGAGAGACTTTCTGGGTCTGGCAGGAGAGTGTGGTAACGGTGGCGGTGGGAGCGTTAACGTTCGAGATCTTCTATCGTTCACGGGGGCTGTTGATTTCCCAACATATGATCGTGACCACTCGCTGTTGAGGCCCCCCGGCTTTGGAACGTGGGGAGATTGCTGA 1347 0.4714 MSMLPATMSNSTSLSEEASVSSGTRVQDFGSSLNPMFSAISPQQQQKIKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKDIIKRVYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSTNPLTTTTNPVDHTLHLHPQNPSTLFPFSTQQQQQHFLNPPNQISLTSWDPPQNPNSTSSNPIQIKHETHHQIPNITPFFQESSHKQFTKPPFLQHLHMTTSNTNTAHMSATALLQKAAHVGAAAISGATQAQSVGHMSSSMTQLEMNEFGTMSHMGTGISSDYLGFHSGNVATWQKSDRLTRDFLGLAGECGNGGGGSVNVRDLLSFTGAVDFPTYDRDHSLLRPPGFGTWGDC* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00912 448 FunFam protein indeterminate-domain 12-like 57 125 - -
Eupl07g00912 448 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Eupl07g00912 448 Pfam Zinc finger, C2H2 type 78 100 IPR013087 -
Eupl07g00912 448 MobiDBLite consensus disorder prediction 1 51 - -
Eupl07g00912 448 MobiDBLite consensus disorder prediction 254 276 - -
Eupl07g00912 448 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 406 IPR031140 -
Eupl07g00912 448 Gene3D Classic Zinc Finger 132 211 - -
Eupl07g00912 448 FunFam protein indeterminate-domain 5, chloroplastic-like 132 211 - -
Eupl07g00912 448 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Eupl07g00912 448 Gene3D Classic Zinc Finger 57 121 - -
Eupl07g00912 448 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Eupl07g00912 448 SMART c2h2final6 154 174 IPR013087 -
Eupl07g00912 448 SMART c2h2final6 78 100 IPR013087 -
Eupl07g00912 448 SMART c2h2final6 119 149 IPR013087 -
Eupl07g00912 448 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00912 Eupl-Chr7 27560637 27565153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00912 17 436 IDZ Gene Family AT4G02670 51.826 7.32e-134 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl07g00912 zf-C2H2 0.0044 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00912 K25870 - nnu:104613223 664.84