Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00877 ATGGCATTGGAGCTGGTTCCATTAGGCACCTTCTTGGCTCTCCTAACAAACCAGGTCATAAAAACAGCACAGGCTGCAAAGGATGTTCTTATAGAGAAGGAGAGCTTCAAGGTCCTATCAAAGTACCTCTGTGACATTGAACCTGTCTTAAAGGAATTGCAACTTCGCAATCTGACTGAGTCTCAGGCCGTGAGGCAGGCTCTGGAGTTCCTCGACAAAGATGTTAAGAAGGCGAATGACTTGGTGGAGAAGTACAAAAATCGATCCCGCTTCTACTTATTGGTCAAGTGCCGACATATCGTCAACGAGGTACAGAATGTTACCAGGGATATTGGAAGGTCCCTGGCTGCTTTGCCCCTCGCGAGCACTGAAGTCCTCACAAATATATCAGAAAAAGTGAACAGGTTGCAGAATGAGATGCAAAGGGTGGAGTTTGAAGCTTCTACAGCTGAGCTCAGAATTGTTGAGAAGTTGGACCAGGGTCTTATGGAACAGAAGGCCGATCTGGGCTTTGCGAACGACATGCTTGGAGAAATAGCAAGGGCAGTAGGGGTTCCCATCGAACCCTCAGAGATAAGCAAAGAGCTTGCGAGTTTCAGACAAGAAAAAGAAGAAGCTGCAGCCCGTAAAGAAAGGGCAGAAGAGTACTTCCTGGAGCAGGTTATTGAGCTGCTCTCTCGTGCTGATGCTGCTAAGGATCAAGAGGAAATCAGGAAGCAGTATTTTCGGAGGATCCAGACTATAGAGAGAATATCGGAAGAATACATTTTGCCACTTCAATCTTTTATTTGTCCAATAGATGGCACAGTTGTGATGGTTGACCCAGTAAGCCTTTGCACTGGCACCACATGCGAGAGGGCAGCCATTGAAGCCTGGTTTGAACGTGGAGATAGAACCGATCCGAAGACAGGTGACTTTCTTGATGATTGGTCTCTGAGATCAAACCATCGATTGAGACAGTCAATTGAAGAGTGGCGAGAACTCAACTACTGCCTTAAGATCAGATCTGCCAAGAAAAAATTGCAATCTAGTGTGGACTTGGCTGTGAAAGAGGCTCTTGACCAAATTCAGGAGCTTATCAAAGAGAACCCAATTAACAAAGATTGGATTGCCATAGAAGGCCTTATTGATATCTCCGTGTCAATTCTTGGAAGCTCACACAACAAGGATGTCAAGAGAAAGGTTTTAACTACGTTACAGGCCGCTGTCGACGGGCATACCAGAAATAAGGAAAGAGTAGTTGAATCCAGAGGAGTTGATCACATAGTTCCTTGCCTTGGACGTTCAAATACATCGAAGGCTGCCGTTGAGCTGCTGTTTGAGCTGTTGCAAGACGGTTCGGGTTGGAACGTATCTGCATCCAGGAAATTATCTGAGCAAAACAGTTCAATTCTTTTCCTCGTTGTGCTTCTGACTACAGAGTCAGCAGAGAAAGCTAAAGCAATCTTGCTGAAGCTCTGCAATGATGATGACGATAACATTATTCATGCTGCGAAAGCCAACTGGTATAAACCACTTATTAATCGCCTCATTCAAGGACCAGAGTCTTCAAGGATATCAATGGTAAAAGGCCTTGTCAAAATGGAATTGGTCGATCAGAATGTAAAGCGCCTTGGTGAGGAAGGAGTAATACCTCCCTTGCTCAAAATGGTTTCAGGAAATTTGGAATCTAAAGAGTTGGCATTATCTGCTCTGGTTAAGTTGTCAAGTTGCAGTGAGAACAAGAAGCTAATTGCAGCTGAAGGAGGGGTTCCTCTTGTTCTAGAACTGATGTTCTCTTCTCATGTCCGCACCATTATTATTGAAAGGTGCTCCAAGATCCTTGAGAGACTGTCTTCCAACAATGATGGCATCAAATTCCTTGTCAACGCAAATGGAGCCTGCCTCGAGTTAGAGCAGATCGTCTCTAATGTGTTAGCATTTCTACAGAATACAAACTCATCCCACATCATCCGGAAGCCTGCTTTGCGTGCCTTGCTCAACATTTGTAAGTCTGAACCAAAGCTTGTGGAGAAGGCAGTTGTGAGTGCCAATGGTGTTTCTTTTATCCTTCCTTTGCTAGATGACCCTGACCAGGAAATACGAGAAGTTGCCCTAAACCTTCTCTTCTGCTTCTCCCAACATGAACCGCATGGGATTGTGGAGTTCCTTCTCACGCAGAGGAGGCTGGAGGCCTTTGTGGGTTTTCTTGAAGACGACAGCAGGAGCGATGCACAGATGGCAGCAGCTGGGTTGTTGGCCAACCTTCCAAAATCTGAAACAACACTCACTAAGAAGCTGGTTGAATCTGATGGGCTTCCAGCGATATTGAAGATCTTGAATTCCGGAACCACGGAAGCGAAGGAGAATGCACTGGGTGCACTTTTCAGGTTCACAGATCCCACGAATCTTGAGTCGCAGCGGATGGTGGTTGAATTGGGAGCCTACCCTTTGCTTGTGAACTTTCTCAGGTCTGGTACAGTAACAGCCAAGGCAAGATCAGCGGCCCTCATAGGTAACTTGTCCTTGAGCAGTCCGATACTCACAGTCATGTCTGAACCAACCAGTTGCTGGTGTTTCCGGACAGCACGCGTACTCGTATGTGAAGCACATGGTGGCATTTGTGACGTGACCAGCACATTTTGTCTTTTGAAGGCAAATGCTTTGTCCGATCTGGTGAAACTTTTGCAAGAGCAGGTTCATGCAACTGCCTATGAAGCACTTCAAGCGCTATCCACATTGGTTTGCGAAGACTCATCTCACAGAGGAGCCAATGTCTTGCATGAAGCCGATGCCATCGGTCCTGTACTGGAGATTCTGAAATGGGGAACATCCTCTTTGAAGGAAGAAGCTCTCGGGCTCTTGGAGAAGGTGTTTGCTACTAGGGAATTGGTGGAGTTGTATGGATCCCGTGCTAGGATCCATCTTGTTAGTCTAACCTCACGGAGCATCCAAGAGGAGAGCCAGCTTGGAAGGAAGGCCAGTAGAGTCTTGATGCAACTAGAGCGATATTCAAGGTCCTCAATGCCTCTTGGTTGA 3018 0.4632 MALELVPLGTFLALLTNQVIKTAQAAKDVLIEKESFKVLSKYLCDIEPVLKELQLRNLTESQAVRQALEFLDKDVKKANDLVEKYKNRSRFYLLVKCRHIVNEVQNVTRDIGRSLAALPLASTEVLTNISEKVNRLQNEMQRVEFEASTAELRIVEKLDQGLMEQKADLGFANDMLGEIARAVGVPIEPSEISKELASFRQEKEEAAARKERAEEYFLEQVIELLSRADAAKDQEEIRKQYFRRIQTIERISEEYILPLQSFICPIDGTVVMVDPVSLCTGTTCERAAIEAWFERGDRTDPKTGDFLDDWSLRSNHRLRQSIEEWRELNYCLKIRSAKKKLQSSVDLAVKEALDQIQELIKENPINKDWIAIEGLIDISVSILGSSHNKDVKRKVLTTLQAAVDGHTRNKERVVESRGVDHIVPCLGRSNTSKAAVELLFELLQDGSGWNVSASRKLSEQNSSILFLVVLLTTESAEKAKAILLKLCNDDDDNIIHAAKANWYKPLINRLIQGPESSRISMVKGLVKMELVDQNVKRLGEEGVIPPLLKMVSGNLESKELALSALVKLSSCSENKKLIAAEGGVPLVLELMFSSHVRTIIIERCSKILERLSSNNDGIKFLVNANGACLELEQIVSNVLAFLQNTNSSHIIRKPALRALLNICKSEPKLVEKAVVSANGVSFILPLLDDPDQEIREVALNLLFCFSQHEPHGIVEFLLTQRRLEAFVGFLEDDSRSDAQMAAAGLLANLPKSETTLTKKLVESDGLPAILKILNSGTTEAKENALGALFRFTDPTNLESQRMVVELGAYPLLVNFLRSGTVTAKARSAALIGNLSLSSPILTVMSEPTSCWCFRTARVLVCEAHGGICDVTSTFCLLKANALSDLVKLLQEQVHATAYEALQALSTLVCEDSSHRGANVLHEADAIGPVLEILKWGTSSLKEEALGLLEKVFATRELVELYGSRARIHLVSLTSRSIQEESQLGRKASRVLMQLERYSRSSMPLG* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00877 1005 Gene3D - 10 122 IPR036537 GO:0007166
Eupl07g00877 1005 ProSiteProfiles U-box domain profile. 257 332 IPR003613 GO:0004842|GO:0016567
Eupl07g00877 1005 Gene3D - 531 628 IPR011989 -
Eupl07g00877 1005 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 583 IPR000225 GO:0005515
Eupl07g00877 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 10 1001 - -
Eupl07g00877 1005 SUPERFAMILY ARM repeat 193 549 IPR016024 -
Eupl07g00877 1005 Pfam U-box domain 262 327 IPR003613 GO:0004842|GO:0016567
Eupl07g00877 1005 Coils Coil 68 88 - -
Eupl07g00877 1005 Gene3D - 338 530 IPR011989 -
Eupl07g00877 1005 Gene3D - 629 991 IPR011989 -
Eupl07g00877 1005 CDD MLKL_NTD 15 144 - -
Eupl07g00877 1005 SUPERFAMILY ARM repeat 802 955 IPR016024 -
Eupl07g00877 1005 SUPERFAMILY RING/U-box 249 328 - -
Eupl07g00877 1005 Coils Coil 196 216 - -
Eupl07g00877 1005 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 582 626 IPR000225 GO:0005515
Eupl07g00877 1005 SUPERFAMILY ARM repeat 481 836 IPR016024 -
Eupl07g00877 1005 SMART Ubox_2 261 325 IPR003613 GO:0004842|GO:0016567
Eupl07g00877 1005 Coils Coil 126 153 - -
Eupl07g00877 1005 CDD RING-Ubox_PUB 262 309 IPR045210 -
Eupl07g00877 1005 SMART arm_5 869 909 IPR000225 GO:0005515
Eupl07g00877 1005 SMART arm_5 406 444 IPR000225 GO:0005515
Eupl07g00877 1005 SMART arm_5 571 613 IPR000225 GO:0005515
Eupl07g00877 1005 SMART arm_5 531 570 IPR000225 GO:0005515
Eupl07g00877 1005 SMART arm_5 667 707 IPR000225 GO:0005515
Eupl07g00877 1005 SMART arm_5 752 793 IPR000225 GO:0005515
Eupl07g00877 1005 SMART arm_5 614 664 IPR000225 GO:0005515
Eupl07g00877 1005 SMART arm_5 796 836 IPR000225 GO:0005515
Eupl07g00877 1005 SMART arm_5 363 404 IPR000225 GO:0005515
Eupl07g00877 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 337 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00877 Eupl-Chr7 26640500 26647336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00877 258 950 U-box Gene Family AT1G68940 27.139 4.02e-44 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00877 - - ming:122092028 1395.56