Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00845 ATGGAAAGTCCGGTGACGTACGAGAGCGATCTCAACCTCAAGGCAACCGAGCTTAGATTAGGCTTGCCCGGGACAGATGAATCCGAGAAACAAACACCTCCTATTGTAATTAGGAGCAACAAACGAGCCTCTACCGAGACAGGAGATGACTGTGGATCCAACAACAATTCCACCACCTCCAATGCAAGAGATGGCGATCGAGAAACCGCTCCGGCCGCCAAGCAACAAGTAGTGGGGTGGCCACCTATCCGATCCTACCGGAAAAATTGCTTGCAACCAAAGAAGACTGAGAGCGAGACAGCCGGAATTTACGTGAAAGTTAGCATGGATGGAGCTCCTTACTTGAGAAAGATTGATCTCAAGGTCTACAAAGGCTACCCAGAGCTCCTCAAAGCCTTAGAGAACATGTTCAGATTTACCATTGGTCAGTACTCAGAGAGAGAAGGCTACAACGGTTCAGAGTTTGTGCCTACTTATGAAGACAAAGATGGTGATTGGATGTTGGTTGGAGATGTTCCATGGGAAATGTTCATCTCCTCTTGCAAGAGGTTGAGAATCATGAAAGGATCAGAAGCTAGAGGTTTGGGTTCTGGTGTATAA 600 0.4733 MESPVTYESDLNLKATELRLGLPGTDESEKQTPPIVIRSNKRASTETGDDCGSNNNSTTSNARDGDRETAPAAKQQVVGWPPIRSYRKNCLQPKKTESETAGIYVKVSMDGAPYLRKIDLKVYKGYPELLKALENMFRFTIGQYSEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFISSCKRLRIMKGSEARGLGSGV* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00845 199 ProSiteProfiles PB1 domain profile. 102 189 IPR000270 GO:0005515
Eupl07g00845 199 MobiDBLite consensus disorder prediction 32 65 - -
Eupl07g00845 199 MobiDBLite consensus disorder prediction 16 78 - -
Eupl07g00845 199 SUPERFAMILY CAD & PB1 domains 96 188 - -
Eupl07g00845 199 Gene3D - 96 199 - -
Eupl07g00845 199 FunFam Auxin-responsive protein 97 199 - -
Eupl07g00845 199 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 193 IPR003311 GO:0005634|GO:0006355
Eupl07g00845 199 Pfam AUX/IAA family 40 196 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00845 Eupl-Chr7 25813262 25815149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00845 106 198 B3 DNA Binding Superfamily AT4G23980 38.710 2.56e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Eupl07g00845 AUX_IAA 1.8e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00845 K14484 - nnu:104612448 336.265