Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00844 ATGACGAACATGCTCGGCGCCGAGCGCGACAAGTATAGTCTGATGAATTTCGAAGAGACGGAATTACGTCTTGGGTTGCCTGGTGGAGGAGGAAGCGAAGGCGAGATAGGAAAGAATTCAGGGAAGAGAGGCTTCTCTGAGACTATTGATTTGAAGCTTAACCTTCCGACGGCGAAGGAATTGGAGATGAATCCAGCTGAGAAGATGAAGAATTCACCTAAGGAGAAGAACCTTCTTCCTTGTACTAATGATCCCGCAAAGCCTCCCGCACCCAAGGCACAGGTGGTGGGTTGGCCACCCGTCCGATCATTCCGCAAGAACATCCTGTCTGTGCAGAAGAGCAGTACTGAGCAGGAGGAGAAGGTTAACAACAGCGCAACCTTCGTGAAGGTTAGCATGGATGGTGCACCTTATTTACGTAAGGTGGACTTGAAGATGTACAAGAGCTACCAAGAGCTGTCTGATGCCTTAGGCAAGATGTTCAGTTCCTTCACAATTGGCAACTGCGGGCCACAAGGAATGAAGGATTTCATGAATGAGAGCAAGTTGATGGATCTTTTGAACGGCTCCGAGTACGTGCCCACGTATGAAGACAAAGACGGTGACTGGATGCTCGTTGGCGATGTCCCATGGGAGATGTTCGTTGATTCATGCAAGCGCTTGCGTATTATGAAAGGATCAGAGGCGATTGGACTCGCACCAAGAGCTGTGGAGAAATGCAAGAACAGAAGCTGA 735 0.4939 MTNMLGAERDKYSLMNFEETELRLGLPGGGGSEGEIGKNSGKRGFSETIDLKLNLPTAKELEMNPAEKMKNSPKEKNLLPCTNDPAKPPAPKAQVVGWPPVRSFRKNILSVQKSSTEQEEKVNNSATFVKVSMDGAPYLRKVDLKMYKSYQELSDALGKMFSSFTIGNCGPQGMKDFMNESKLMDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00844 244 ProSiteProfiles PB1 domain profile. 126 226 IPR000270 GO:0005515
Eupl07g00844 244 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 231 IPR003311 GO:0005634|GO:0006355
Eupl07g00844 244 Gene3D - 120 238 - -
Eupl07g00844 244 Pfam AUX/IAA family 20 235 IPR033389 -
Eupl07g00844 244 FunFam Auxin-responsive protein 121 236 - -
Eupl07g00844 244 MobiDBLite consensus disorder prediction 24 43 - -
Eupl07g00844 244 SUPERFAMILY CAD & PB1 domains 123 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00844 Eupl-Chr7 25796183 25799090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00844 111 229 B3 DNA Binding Superfamily AT3G61830 31.092 2.09e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Eupl07g00844 AUX_IAA 1.5e-87 CL0072