Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00839 ATGACGAGCCAGGTGATGAAGGTTCGGAAGGAGACGCTGGCGGCGTGCATGACATGCCCTCTCTGCAACAAGCTGTTGAGGGAAGCTACGACCATATCTGAATGCCTTCATACGTTTTGCAGGAAGTGCATATATGAGAAGCTCACAGATGAGGAGGTAGATTGCTGTCCAATATGCAACATTGATCTGGGTTGTGTTCCAGTGGAGAAGCTCAGGCCAGACCACAATTTACAAGATCTGAGGGCCAAGATTTTCCCTTTCAAAAGGAGAAAGGTAAAGGTACCTGAAGGTATGCCTTCAATTTCATTGCCAGTTAGAAGAAAGGAAAGATCACTCTCATCACTGGTGGTCAGCACTCCCCGAGTATCGACGCAGACCGGCTTGACTGGAAGAAGAACAAAAGCTGTTGCTAGAAAGGCGGCCGCTTTACGGGGATGCAGTTTCACCATTGAAGATTCCATTAAAAAAGAGGAAGTTAATGTGGAAGATCGTCCAGAGAGCTCAAGCTCACCTGAGACCCTATATAAGATTGCTCAAAATAAAAGGCAGAATTCTTCCACTGCTGAGCCGTCTGACCACCACATGTCTAATAAAGATACTGAGAATGGTGCTGAACCATGGGCAGGGAAAGTTGATCTCTGGAAACCCTTAAACTGCTTGGTTGAAGCCGCAAATAGAACAAAGTCTTTTAAATTCAATTCACAAGGGTCCGTTGTCAAACCAGAACCACCCCATGCTCCTGACAGTGAAGTACATGTTCCAAAAGCCCGAGTTAGGGAACATATGCACAAATCAAAAGTCCAGGACAACAAGAATGGCACCACTTCTGCTCCTCTGGGATTGGTGAAACCTAGAAAGTTGCAAGGGATGCGCCGGAAAAGGGCAGTTGCTTCTAGGGAGCTGGGCACCTCAGCTCAAGCTATACTTGATGCTGTGGGTGTCAAACGTAACAGAAGAATTAGTCCAATTTGGTTCACATTAGTGGCTTCTGAAGACCAGGAAGGAGATGCACCCTTGCCACAGATATCTGCTTGTTACTTGAGGATTAAGGATGGTAATGTACCTGTTTCGTTTATCCAAAAGTACCTCGTAAAGAAACTTGATCTTACAAGTGAAGCTGAGGTGGAGATTACGTGTCGGGGCCAGCCAGTGGTTCCCACATTACGACTGAATAACTTAGTAGATTTGTGGCTACGGACAGCATCGACATCGCAAAGAGTACCGGCATCCGTGGGCACCTCAGCCAAGGATTTCGTGATGGTGTTGGTCTATGCACGGAAGGTTCAGACCCTTTAA 1296 0.4668 MTSQVMKVRKETLAACMTCPLCNKLLREATTISECLHTFCRKCIYEKLTDEEVDCCPICNIDLGCVPVEKLRPDHNLQDLRAKIFPFKRRKVKVPEGMPSISLPVRRKERSLSSLVVSTPRVSTQTGLTGRRTKAVARKAAALRGCSFTIEDSIKKEEVNVEDRPESSSSPETLYKIAQNKRQNSSTAEPSDHHMSNKDTENGAEPWAGKVDLWKPLNCLVEAANRTKSFKFNSQGSVVKPEPPHAPDSEVHVPKARVREHMHKSKVQDNKNGTTSAPLGLVKPRKLQGMRRKRAVASRELGTSAQAILDAVGVKRNRRISPIWFTLVASEDQEGDAPLPQISACYLRIKDGNVPVSFIQKYLVKKLDLTSEAEVEITCRGQPVVPTLRLNNLVDLWLRTASTSQRVPASVGTSAKDFVMVLVYARKVQTL* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00839 431 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Eupl07g00839 431 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Eupl07g00839 431 MobiDBLite consensus disorder prediction 179 206 - -
Eupl07g00839 431 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Eupl07g00839 431 CDD RING-HC_PCGF 17 60 - -
Eupl07g00839 431 SUPERFAMILY RING/U-box 13 84 - -
Eupl07g00839 431 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 427 IPR044807 GO:0004842
Eupl07g00839 431 SMART ring_2 19 59 IPR001841 -
Eupl07g00839 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 110 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00839 Eupl-Chr7 25735749 25755487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00839 5 350 C3H Transcription Factor Family AT2G30580 52.422 4.98e-109 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00839 K16277 - nnu:104612433 684.1