Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00770 ATGGCAGATGAAGTTGTCCCATTTGGTGATTTGAAGTCGAATATCAGAGTAAAGGAGGAGGGATCTGATATGGGTTTTGAAAAGAAAGTCTCTGTAAAGGAAGAAGTAATGGATTTTGATCCATTTCAGCCCTTGGTACCAAAAAGAGAGTCCAAAGATATGAGCTGTGATAATTTAATCGGTTCCAAACCCGTTTACACTAAGCAGAAGCAGGAAACGAGAGGGGATCTGGGACCTGTTGTGTCTCTGGTTGAGGATGGGGAGTTTCCAGAAGAACCCGATTGGTTGTTGGTGGGAAGGAGTACTGTAATGGGGCTTTCGACGTCCCGGGGTAAGAGATTGGAGTTAAATGAGATCGTCCATTTTTCTTTTCCTTCCACTGGGGCATCGAAGATTGTTCGCTTTTCGACCAAAAGATCAGGGGAGATTGGGAGGCTGCCAATTGAGTGGACGAAGTGCATCATTCCCCTTGTACGTTCTTCGAAGGTAAAAATTTGTGGTCAATGTGTGGTGGAACCATTTGAGCTTTGTATGATGCAAGAGATTTATTTGAATGTAAGCTTCTATATTCATCATTCGATTTTCACCGATGGGGACAAGTCTTCATGGAAGCTAACTGCTCCATCACACTTGGACTCTACTGTTCATCCTCTTCCAACTCTATTCAAATTGCTGACAATCAAACCATTTAAGAAGGCTGAATTCACTCCAGAGGAGGTTCACACTCGTAAGCGTTCGCTGAATCTAGAAGGTGCTTCAGATGAGACCCTACCGTTGCCGTCACTTGTGAAACGAAGAAAGGGGAACCAACAATATCCTGAACAGAATAGCGGGGAACAAAATGCCTCAGAGTCTAGCTTGACAAAGCTTGTTGGTGCTGCAGATGTATACAACTTGGAGGAGATGGATCCCCCAAGTACACTTACGTGTAATCTGCACCCATACCAGAAACAAGCTCTCCACTGGATGTCAGAATCAGAGAAGGGAATTGACGTTGAGCAAGCGGCAAAAAGTCTTCATCCATGTTGGGAGGCATACCATATATCCGACAAGAGAGCTTCTGCAGTCTATATAAACATCTTCTCTGGGGAAGCAAGTACTCAGTTTCCCAGTGTGACGCAGATGGCCAGAGGAGGAATTTTAGCAGATGCAATGGGTCTTGGGAAGACTGTCATGACAATTGCTCTAATACTTGCAAAACCAGGGAGGGGAAGCTCTGACAACCAAGAAATCATCAGGGACTGTAAGGATGAAGATCCTGAAAAAGTGAAGAAAAAGAATACAGATTTGCGAACAAAACCCCCACGAATAGCTAAAGGTGGCACCCTTATTGTCTGTCCAATGGCTTTGTTAGGGCAGTGGAAGGATGAACTCGAAACCCATTCCCAGCCAGGAACTCTTCAAGTATTTGTGCACTATGGTGGGGACAGAACCAGTGACCCCAATGTGATCGCAGAGCATGATGTGGTTTTAACAACTTATGGGGTCTTAACTGCAGCTTACAAATATGATCCAGAAGAAAGCATTTTCCACAAAGTAGAGTGGTTTAGGGTGGTACTTGATGAAGCACACACCATTAAATCCTCAAGGACCCAAGTGGCTCAGGCGGCCTTCACGTTATCCTCACATTGCCGGTGGTGTCTAACGGGTACTCCTCTTCAGAATAATTTGGAAGACCTCTACAGTCTTCTATGCTTCTTACATGTTGAACCATGGTGCAACTGGGCCTGGTGGCAGAAATTGATTCAAAGGCCTTATGAGTGTGGTGATGAACGAGGGCTGAGATTAGTTAAGGCTATTCTAAGGCCATTGATGCTGAGGAGAACAAAGGATACAAAAGACAAAGAAGGAAGGCCCATACTTGTTCTTCCTCCGGCTGACATCCAAATCATCGAGTGTGAACAATCTGAAGCTGAACGAGATTTCTATGATGCCCTCTTCAAGAAGTCCAAGGTTAAATTTGATCAGTTTGTGGCGCAAGGCAAAGTTCTCCACAACTACGCATCTATTCTTGAGCTGCTACTTCGATTGAGGCAGTGTTGCAACCACCCATTTCTCGTTATGAGCCGAGGTGATTCTCAAGAGTACGCGGATTTGAACAAACTTGCAAGGCGGTTCCTCGAAACCAATTCGAATTCCACCAACTTTAGTCAGACAGTTCCTACTCGAGCATATGTTGAAGAGGTTGTTGAGGGTATCCGAAAGGGCGAAAACATGGAGTGTCCAATCTGTCTAGAGTCTGCAGATGACCCTGTGCTCACCCCATGTGCACACCTGATGTGCAGGGAGTGTCTCCTCTCTAGCTGGCGGACCCCATCAAACGGGATGTGCCCAATTTGTAGGCAGCAATTAATGAAGTATGATCTAATCACATGCCCATCGGATAATCGATTCCGGATTGACATTGAGGAGAACTGGAAGGAGTCATCCAAGGTTTTGAAGCTCCTGAATTGCTTGGAGAGTCTACATCAATCAGGTTCTGGTGAAAAGAGCATTGTTTTTAGCCAGTGGACTTCATTTTTGGATCTCTTGCAGATCCCTTTGAGGAGAAGAGGAATTGGTTTCTTGAGATTTGATGGAAAATTGTCACAGAAGCATAGGGAGAAGGTGTTGACGGAGTTTAGTGACACCCAAGAGAAAATGGTGTTGTTGATGTCGTTGAAGGCGGGAGGTGTAGGCTTGAACTTGACGGCAGCTTCGAATGTCTTTCTAATGGATCCGTGGTGGAATCCGGCGGTTGAGGAGCAAGCGATAATGCGAATTCATCGTATTGGACAAAAGCGAACTGTTTCTGTTAGAAGATTCATTGTCAAGGATACAGTGGAGGATCGCATGCAACAGGTTCAGGCAAGGAAGCAGCGCATGATTGAAGGAGCCCTGACTGATGAAGAAGTTAGAACGGCTAGGCTTGAAGAGCTCAAAATGCTTTTTAGATGA 2937 0.4522 MADEVVPFGDLKSNIRVKEEGSDMGFEKKVSVKEEVMDFDPFQPLVPKRESKDMSCDNLIGSKPVYTKQKQETRGDLGPVVSLVEDGEFPEEPDWLLVGRSTVMGLSTSRGKRLELNEIVHFSFPSTGASKIVRFSTKRSGEIGRLPIEWTKCIIPLVRSSKVKICGQCVVEPFELCMMQEIYLNVSFYIHHSIFTDGDKSSWKLTAPSHLDSTVHPLPTLFKLLTIKPFKKAEFTPEEVHTRKRSLNLEGASDETLPLPSLVKRRKGNQQYPEQNSGEQNASESSLTKLVGAADVYNLEEMDPPSTLTCNLHPYQKQALHWMSESEKGIDVEQAAKSLHPCWEAYHISDKRASAVYINIFSGEASTQFPSVTQMARGGILADAMGLGKTVMTIALILAKPGRGSSDNQEIIRDCKDEDPEKVKKKNTDLRTKPPRIAKGGTLIVCPMALLGQWKDELETHSQPGTLQVFVHYGGDRTSDPNVIAEHDVVLTTYGVLTAAYKYDPEESIFHKVEWFRVVLDEAHTIKSSRTQVAQAAFTLSSHCRWCLTGTPLQNNLEDLYSLLCFLHVEPWCNWAWWQKLIQRPYECGDERGLRLVKAILRPLMLRRTKDTKDKEGRPILVLPPADIQIIECEQSEAERDFYDALFKKSKVKFDQFVAQGKVLHNYASILELLLRLRQCCNHPFLVMSRGDSQEYADLNKLARRFLETNSNSTNFSQTVPTRAYVEEVVEGIRKGENMECPICLESADDPVLTPCAHLMCRECLLSSWRTPSNGMCPICRQQLMKYDLITCPSDNRFRIDIEENWKESSKVLKLLNCLESLHQSGSGEKSIVFSQWTSFLDLLQIPLRRRGIGFLRFDGKLSQKHREKVLTEFSDTQEKMVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRTVSVRRFIVKDTVEDRMQQVQARKQRMIEGALTDEEVRTARLEELKMLFR* 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00770 978 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 971 IPR027417 -
Eupl07g00770 978 SMART HIRAN_2 98 190 IPR014905 GO:0003676|GO:0008270|GO:0016818
Eupl07g00770 978 SMART ultradead3 308 587 IPR014001 -
Eupl07g00770 978 Pfam Zinc finger, C3HC4 type (RING finger) 738 784 - -
Eupl07g00770 978 Gene3D - 366 609 IPR038718 -
Eupl07g00770 978 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 608 IPR027417 -
Eupl07g00770 978 SUPERFAMILY RING/U-box 728 787 - -
Eupl07g00770 978 MobiDBLite consensus disorder prediction 268 286 - -
Eupl07g00770 978 Pfam SNF2-related domain 315 686 IPR000330 GO:0005524|GO:0140658
Eupl07g00770 978 FunFam DNA repair protein RAD5B 367 609 - -
Eupl07g00770 978 ProSitePatterns Zinc finger RING-type signature. 756 765 IPR017907 -
Eupl07g00770 978 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 804 IPR013083 -
Eupl07g00770 978 SMART helicmild6 842 925 IPR001650 -
Eupl07g00770 978 CDD SF2_C_SNF 809 936 - -
Eupl07g00770 978 ProSiteProfiles Zinc finger RING-type profile. 741 781 IPR001841 -
Eupl07g00770 978 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 88 978 - -
Eupl07g00770 978 Gene3D - 624 978 IPR027417 -
Eupl07g00770 978 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 370 570 IPR014001 -
Eupl07g00770 978 CDD DEXDc_SHPRH-like 312 608 - -
Eupl07g00770 978 MobiDBLite consensus disorder prediction 258 286 - -
Eupl07g00770 978 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 811 978 IPR001650 -
Eupl07g00770 978 SMART ring_2 741 780 IPR001841 -
Eupl07g00770 978 Pfam HIRAN domain 102 186 IPR014905 GO:0003676|GO:0008270|GO:0016818
Eupl07g00770 978 Pfam Helicase conserved C-terminal domain 814 925 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00770 Eupl-Chr7 23676449 23683761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00770 63 978 RAD5 or RAD16-like Gene Family AT5G43530 71.164 0.0 1370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl07g00770 SNF2_N 2.5e-88 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00770 K15505 - csin:114274303 1474.91