Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00753 ATGGATTCAATTCACAGGAACTTATATACCTATGGATCCCAAGCTCTACCTCCCATCAAAAGCCAACAACAGTCTCACTCGCATTCTGTGGACACCAGCTTCCCCATTTTAGCCATTGCTCTACTAGGAATCTTAACCACAGCATTCTTATTAGTCAGTTACTATGTCTTTGTGATCAAATGCTGCTTGAATTGGCACCGTATCGATTTCCTAAGACGATTTTCGATATCACAAGCTCGGCAGCACGAAGACCCATTAATGGTCTATGCTCCACCAACTGAGAATCGCGGTCTTGATGAATCGGTAATTCGTGCAATCCCGATTTTTCAATTCAAGAGAGGAGGGGAAGGAGAAGGCGAAGAGAGAAGCTTTTTCGAGTGCGCGGTTTGCTTGAACGAGTTTCAAGAAGAAGAGAAGCTAAGAGTTCTCCCCAATTGCACTCATGCCTTCCATATCGATTGCATCGATGTATGGCTCCAAAGTAATGCCAATTGCCCTCTTTGCAGATCAAGCATTTCTACAACAACCGAATTTCCATCTGATCAGATCATCGCCCCGAGTTCTTCTCCTCAACAGCAGAGTCCATTTACTGATAATCTCATGGGTGGTGATGAGGATTTTGTAGTGATCGAAATGACGAATGGAGATAGTGTAGATCAATCAGCTCATAGACGTCAAGAAACAGAAAATTCAGGAGAACTCTCAGTTCAATCAATTAACCCTTCTCCAAGAAAGTTAGAACACAGAGTTGTGCACAAGAAAGCAAGAAAGTTCCATCATGTTTCAAGCATGGGAGATGAGTGCATTGATGTTAGAGCGAAAGATGATCAGTTCTTAGTCCAACCCATTAGGAGATCTATCTCAATGGACTCTTCGGCCGATCGACAACTCTATCTAGCTGTTCAAGAGATCATACAACAGAACAGGCATCTGAGTGAGGTTAGTCCAAGTGAAGGTTGTAGTAGCAGAGTCCGCCGATCGTTCTTCTCTTTCGGCCACAGCCGAGGATCGAGAAATGCAGTTCTTCCGATCCAATTCGAATCGTAA 1047 0.4374 MDSIHRNLYTYGSQALPPIKSQQQSHSHSVDTSFPILAIALLGILTTAFLLVSYYVFVIKCCLNWHRIDFLRRFSISQARQHEDPLMVYAPPTENRGLDESVIRAIPIFQFKRGGEGEGEERSFFECAVCLNEFQEEEKLRVLPNCTHAFHIDCIDVWLQSNANCPLCRSSISTTTEFPSDQIIAPSSSPQQQSPFTDNLMGGDEDFVVIEMTNGDSVDQSAHRRQETENSGELSVQSINPSPRKLEHRVVHKKARKFHHVSSMGDECIDVRAKDDQFLVQPIRRSISMDSSADRQLYLAVQEIIQQNRHLSEVSPSEGCSSRVRRSFFSFGHSRGSRNAVLPIQFES* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00753 348 CDD RING-H2_EL5-like 126 169 - -
Eupl07g00753 348 Pfam Ring finger domain 126 169 IPR001841 -
Eupl07g00753 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 175 IPR013083 -
Eupl07g00753 348 PANTHER RING-H2 FINGER PROTEIN ATL16 17 344 IPR044600 GO:0016567|GO:0016740
Eupl07g00753 348 SMART ring_2 127 168 IPR001841 -
Eupl07g00753 348 SUPERFAMILY RING/U-box 126 179 - -
Eupl07g00753 348 MobiDBLite consensus disorder prediction 216 246 - -
Eupl07g00753 348 FunFam E3 ubiquitin-protein ligase ATL6 88 175 - -
Eupl07g00753 348 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00753 Eupl-Chr7 23241760 23243516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00753 27 347 C3H Transcription Factor Family AT1G04360 52.137 1.16e-111 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00753 - - nnu:104610035 492.656