Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00716 ATGGCAGATCCAGTTATTTATGCGAATCCTGCGCGTGACATTGAGCAAGCACTTATTGCTTTGAAGAAAGGTGCTCAGTTAATCAAGTATTGTCGGAAAGGGAAGCCTAAATTTTGCCCATTCAGAATTTCTACTGATGAAACAACTCTGATCTGGTATTCGCATGGAGGGGAAAGGAGTCTGAAATTATCTTCTGTCTCACGTATTATCCCTGGACAGAGAACTGCCGTGTTTAGGAGATATTTGCGTCCCGAAAAGGATTATTTGTCATTTTCTCTTCTATATAATAATGGTGAAAGATCTCTTGATCTGATTTGCAAGGACAAAGTTGAGGCAGAGGTGTGGTTTGCAGGCCTTAAGGCATTGATTACTACAGGCCAGCGTAGTAGGCGTACTAAGAGTGATATTTCTGATTTTCATGATGACGGAGAATTCCTTCAAAATTGTCGTCCTTTTGGAGCAATACTAGAGGCTAATTCAAGTCTTCCCCGTAGTGTTAACACAAACGCGTTGGTTGACGTTTGTCCTCGTGAATCTACTTCGAATTCTAGAAGGTCAGATGTGGGGTCAGACCGTGCAAATATGCAACTAAGAACAAGTATCGGAGATGGTTCCCGACTTAGTGTTTCAAGCGCTCCTAGCTCCTCAAGTGGTTCCGGACCAGATGACATTGAATCCTTGGGTGATGTTTATGTTTGGGGAGAGGTTTGGTGTGATGGGAGTCTAACCGACGGATCTGTGAACTCTTTCCCTTCAAAAACTGATGTGCTGCTTCCTAAGCCTTTAGAGTCAAATGTAGTATTAGATGTTCATCAGATTGCTTGTGGTGTTAGACATGCTGCTCTTGTTACGAGACAAGGTGAGGTTTTCACTTGGGGTGAGGAATCTGGTGGGCGGCTTGGCCATGGAATCGATACAGATTTCAGTCGCCCTCAGCTTGTTGAGTTTTTGGCTGTCAATAATGTGGATTATGTTCAATGCGGCGAGTATCATACGTGTGCTGTGTCCACATCTGGTGATCTATTTACTTGGGGTGATGGTACCCATAATGCTGGACTACTTGGTCATGGCACTGATGTTAGCCATTGGATACCCAAAAGAGTCTCTGGTCCTTTAGACGGACTTCAAGTTCTATCTGTTGCATGTGGCACATGGCATACGGCATTGGTAACTTCTAATAGGAAATTGTTTACATTTGGTGATGGAACATTTGGTGTTTTAGGCCATGGAAGTCGAGAAAGCGTTGAATACCCAAGGGAAGTTGAATCTTTGAGTGGACTAAAGACTGTTAAGGTTGCGTGTGGAGTATGGCACACTGCAGCTATTGTAGAGGTCATGGGACAACATGGTGCAAACATTTCATCTAGAAAGCTGTTCACCTGGGGTGACGGTGACAAAAACTGTTTGGGTCATGGTGATAAGGAACCACGCCTGGTTCCCACCTGTATCCCATCACTTATTGACTACAACTTCAACCAGCTGGCCTGTGGACATAGTATTACTGTTGCTCTCACAACTTCAGGGCATGTTTTTACCATGGGAAGTACTGCATATGGTCAGCTGGGCAACCCACAGTCTGATGGTAAGATACCTTGCTTAGTACAAGATAGATTGGTAGGTGAATTCATTGAAGATATCTCATGTGGTGCATTTCATGTTGCTGTTCTGACATCAAGAAGTGAAGTATTAACCTGGGGTAGAGGTGCCAATGGAAGATTGGGACATGGGGATATTGAAGATAGGAAATCTCCAACTCTAGTTGAAGCATTAAAAGATAGGCATGTGAAAAGTATATCATGTGGCTCAAACTTCACTGCAAGTATATGCATTCACAAGTGGGTATCTGGTGTGGACCAATCGCTCTGCTCTGGTTGTCGACAAGCATTTGGTTTTACTAGAAAGAGGCATAACTGCTACAACTGTGGTCTGGTGCACTGCCATTCTTGCAGCTCCAAAAAAGTATTGAGAGCTGCATTGGCTCCAACTCCAGGCAAACCACATCGTGTATGTGATTCTTGCTATGCAAAACTTAAAGCATCTGAAGCTGGTAGTGTCTCTATATCTAATAGGAAGAATGCTGCACCTCGGCGATCAATTGATAACAGGGAGAGGTTTGACAGGGGAGAGGTAAGGTCTTCAAGGATTCTGTTGTCTCCTAGCACAGAACCAGTGAAATACCTTGACATCAAGTCAGTTAAGCAAGGGATGAAATCTGATTCTATTTCTGTAATCCGATCTTCCCAAGTTCCAACAATCTTGCAGCTAAAAGATATTGCTTTTCCAAGTTCACTGAGTGCACTTCAACATGCTTTAAAACCAGTTATTACATCAGCACCTCAGCCAGCAATGACCCCAAGACCTGCTTCGCCATTTTCAACGAAGCCAAGCCCTCCACGCTCTGTAACTCCTGTATTTTCTAAGAGCATCATTGATAGCCTCCAGAAAACAAACGAACTTTTGAACCAAGAAGTCCTGAAGTTGCAAAGCCAAGTTAGAAGTTTGAGACAGAAGTGTGAGATTCAAGATGTGGAGCTGCAGAAATCACAAAATATAGCTGAAGAAGCTGCTTCTTTGGCTGCAGAGGAATCTTCAAACTGTACAGTAGCAACAGAAGTTATCAAGTCCATTGCTGCCCAGTTGAAGGACACGATCGAGAAGTTACCTCCTGAGGTTTATGATAGTGAAAACTTCAAAGCCATGCATAGTCAAATAGAAGATTTGTTGAAAACAAATGAAAGCCATGCATCAGAAGTTTCTTCTTCCTTTCCAGCAGACTGTTCAGAGCCTAACCAACAAAATAAGCTTGATAATCCTCCCTTGGCCAATGAAACCTCTACTAACATACATGATCAGAGTATTGATGATCCTGGTTATGGTACAGGAGTTACAGATGTATCACAGAATGCTGCAGGAAATGGACCATCTGTTTCTGATATCAGAGAGGCTGTTTCTCACAAAAGCATTGAGAACAGTTCAAGATCACCTAGAATTTCAACAATGAAGAATGGAGAAGAAAGAGAAGTGATTGAGCAATTTGAACCTGGTGTGTATGCAACTCTCATTCAAGTTCGGAATGGGACAAAAGTCTTCAAACGAGTTAGATTCAGCAAAAAAAGGTTTGCCGCGCAGCAGGCAGAAGAGTGGTGGAGGGAGAATAAAGATAGAGTACTTAGGAGGTATAACAACCAAGGGACAGATAGTGCTCCAACCACATCATCCAACAGTGCAGCACCGGCTGAGGAAGAAGATGCATCACCATCTTCATAA 3267 0.431 MADPVIYANPARDIEQALIALKKGAQLIKYCRKGKPKFCPFRISTDETTLIWYSHGGERSLKLSSVSRIIPGQRTAVFRRYLRPEKDYLSFSLLYNNGERSLDLICKDKVEAEVWFAGLKALITTGQRSRRTKSDISDFHDDGEFLQNCRPFGAILEANSSLPRSVNTNALVDVCPRESTSNSRRSDVGSDRANMQLRTSIGDGSRLSVSSAPSSSSGSGPDDIESLGDVYVWGEVWCDGSLTDGSVNSFPSKTDVLLPKPLESNVVLDVHQIACGVRHAALVTRQGEVFTWGEESGGRLGHGIDTDFSRPQLVEFLAVNNVDYVQCGEYHTCAVSTSGDLFTWGDGTHNAGLLGHGTDVSHWIPKRVSGPLDGLQVLSVACGTWHTALVTSNRKLFTFGDGTFGVLGHGSRESVEYPREVESLSGLKTVKVACGVWHTAAIVEVMGQHGANISSRKLFTWGDGDKNCLGHGDKEPRLVPTCIPSLIDYNFNQLACGHSITVALTTSGHVFTMGSTAYGQLGNPQSDGKIPCLVQDRLVGEFIEDISCGAFHVAVLTSRSEVLTWGRGANGRLGHGDIEDRKSPTLVEALKDRHVKSISCGSNFTASICIHKWVSGVDQSLCSGCRQAFGFTRKRHNCYNCGLVHCHSCSSKKVLRAALAPTPGKPHRVCDSCYAKLKASEAGSVSISNRKNAAPRRSIDNRERFDRGEVRSSRILLSPSTEPVKYLDIKSVKQGMKSDSISVIRSSQVPTILQLKDIAFPSSLSALQHALKPVITSAPQPAMTPRPASPFSTKPSPPRSVTPVFSKSIIDSLQKTNELLNQEVLKLQSQVRSLRQKCEIQDVELQKSQNIAEEAASLAAEESSNCTVATEVIKSIAAQLKDTIEKLPPEVYDSENFKAMHSQIEDLLKTNESHASEVSSSFPADCSEPNQQNKLDNPPLANETSTNIHDQSIDDPGYGTGVTDVSQNAAGNGPSVSDIREAVSHKSIENSSRSPRISTMKNGEEREVIEQFEPGVYATLIQVRNGTKVFKRVRFSKKRFAAQQAEEWWRENKDRVLRRYNNQGTDSAPTTSSNSAAPAEEEDASPSS* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00716 1088 CDD FYVE_like_SF 622 674 - -
Eupl07g00716 1088 PRINTS Chromosome condensation regulator RCC1 signature 396 410 IPR000408 -
Eupl07g00716 1088 PRINTS Chromosome condensation regulator RCC1 signature 497 515 IPR000408 -
Eupl07g00716 1088 PRINTS Chromosome condensation regulator RCC1 signature 339 355 IPR000408 -
Eupl07g00716 1088 PRINTS Chromosome condensation regulator RCC1 signature 289 305 IPR000408 -
Eupl07g00716 1088 PRINTS Chromosome condensation regulator RCC1 signature 555 576 IPR000408 -
Eupl07g00716 1088 PRINTS Chromosome condensation regulator RCC1 signature 380 396 IPR000408 -
Eupl07g00716 1088 MobiDBLite consensus disorder prediction 913 953 - -
Eupl07g00716 1088 MobiDBLite consensus disorder prediction 1061 1088 - -
Eupl07g00716 1088 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 287 338 IPR000408 -
Eupl07g00716 1088 SMART fyve_4 610 679 IPR000306 GO:0046872
Eupl07g00716 1088 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 394 445 IPR000408 -
Eupl07g00716 1088 Pfam FYVE zinc finger 612 678 IPR000306 GO:0046872
Eupl07g00716 1088 SUPERFAMILY PH domain-like 14 123 - -
Eupl07g00716 1088 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 508 559 IPR000408 -
Eupl07g00716 1088 MobiDBLite consensus disorder prediction 783 797 - -
Eupl07g00716 1088 Coils Coil 810 837 - -
Eupl07g00716 1088 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 432 442 IPR000408 -
Eupl07g00716 1088 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 339 393 IPR000408 -
Eupl07g00716 1088 MobiDBLite consensus disorder prediction 203 222 - -
Eupl07g00716 1088 Pfam Regulator of chromosome condensation (RCC1) repeat 396 442 IPR000408 -
Eupl07g00716 1088 Pfam Regulator of chromosome condensation (RCC1) repeat 507 556 IPR000408 -
Eupl07g00716 1088 Pfam Regulator of chromosome condensation (RCC1) repeat 458 504 IPR000408 -
Eupl07g00716 1088 Pfam Regulator of chromosome condensation (RCC1) repeat 287 335 IPR000408 -
Eupl07g00716 1088 Pfam Regulator of chromosome condensation (RCC1) repeat 338 389 IPR000408 -
Eupl07g00716 1088 Pfam Regulator of chromosome condensation (RCC1) repeat 561 607 IPR000408 -
Eupl07g00716 1088 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 456 507 IPR000408 -
Eupl07g00716 1088 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 560 611 IPR000408 -
Eupl07g00716 1088 MobiDBLite consensus disorder prediction 911 977 - -
Eupl07g00716 1088 Pfam Transcription factor BRX N-terminal domain 861 897 IPR027988 -
Eupl07g00716 1088 MobiDBLite consensus disorder prediction 777 800 - -
Eupl07g00716 1088 CDD PH_PLC_plant-like 12 124 - -
Eupl07g00716 1088 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 380 390 IPR000408 -
Eupl07g00716 1088 Gene3D - 205 452 IPR009091 -
Eupl07g00716 1088 Gene3D - 453 625 IPR009091 -
Eupl07g00716 1088 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 228 286 IPR000408 -
Eupl07g00716 1088 FunFam PH, RCC1 and FYVE domains-containing protein 1 200 446 - -
Eupl07g00716 1088 ProSiteProfiles BRX domain profile. 1006 1061 IPR013591 -
Eupl07g00716 1088 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 616 678 IPR017455 -
Eupl07g00716 1088 SUPERFAMILY FYVE/PHD zinc finger 612 679 IPR011011 -
Eupl07g00716 1088 SUPERFAMILY RCC1/BLIP-II 228 613 IPR009091 -
Eupl07g00716 1088 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 886 - -
Eupl07g00716 1088 Gene3D - 13 133 IPR011993 -
Eupl07g00716 1088 FunFam PH, RCC1 and FYVE domains-containing protein 1 447 617 - -
Eupl07g00716 1088 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 684 IPR013083 -
Eupl07g00716 1088 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 273 283 IPR000408 -
Eupl07g00716 1088 Pfam Transcription factor regulating root and shoot growth via Pin3 1005 1060 IPR013591 -
Eupl07g00716 1088 MobiDBLite consensus disorder prediction 1059 1088 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00716 Eupl-Chr7 22009068 22060503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00716 1006 1063 Major Intrinsic Protein MIP AT1G31880 41.379 1.03e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00716 - - cave:132177703 1544.25