Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl07g00713 ATGCAAGGTCTGATGGATGCAAAATCTGTAAGATGTCTGATCAATAGCATTTCTCGATTCATTCATCTAGTTGCCTGCCAAACTGTGAAAACTGAGCCCCTTCAAAAGGATTACAGATATATGGTGTGTTTATTGAGGCTTTTGAAGCCAGTGCTTGATGAAGTTGTTGATTCCAAAATACCTTCAGATGAAATGCTAGTTAAGGAATTCGAGGAATTGGATGTAGTCGTTAATGAGGCTAGAGAGTTCATGGAGAAATGGTGTCCAAAGATGAGCAAGATACGCACTGTCTTACAGATCGAACCATTGGTGATAAAGGTCCAGATTTCTTCGCTGGATATTTGTCACATATTGTGTAGATTGCTACAATCATCAGCATTTACTTCACATTTAGCTTCTGTTCAGCATTGTATGCAGGAACTTCAAAGTTCAGAGCAGGAGAGAATATCAGGACTAATAGATGAGGCTCTGAGAGATCAAAGGGACAATCTCACCCCTCGTGCCGAGCATCTAATAAAAATTTGCGAGTCAATGGGTTTGACATCAAATCAGGACTTGCTGATGGAGAGTGCGGCCTTGGAAAAAGAGAGAGCAAAGGCCCAACTCAATAAAAATAAAGGAGAATCAGATCTCATTGATCTGATCGCGGATCTCATTGCTCATATTCGTGATTGCATGTTTAAACTCGAGCAATTTGAGGCTATAAACGGTCTACCCATCCCTCCATACTTCCGCTGCCCACTTTCATTGGGACTGATGTTGGACCCCGTAATTGTGGCCTCTGGACAGACCTATGAGAAGGCTTTCATCCAGAAGTGGCTTGATCATGGGCTGACCATTTGCCCCAAAACCCGTCAAATTCTTGCACATACAAATCTCATTCCAAATTACACGGTCAAGGCTCTAATTGCAAATTGGTGCGAGGATAACAACATAAGGGTTTTTGAGACTGTTAATGGCAGTAATATCTCATCCTCTTTATCTCATCATGTATCTCCTCAAGATTTCATCTGTGCAGATAGTTTCCGTGGTTCTTTGCATAGTAGCAATTCTACTTCAAGGTCCTCTCTTGAAGTTGGGAATGGGTCTGAGAGGCAAAGAGTCGAGTTCTCATCAAAATGTGGTGAGGAAGACTCCAACTTAGGCTGTAGGAAGATGACTCCAAAGTGTGACAACCCATCCCCAGAACAGTTACATATTCACAGCCGGAGTGAGTCAGTCTCTAGTGCCATTTCCAGCATTGAAGATGTGCCTACAGTATTCACAGAAGGTCCTACCGAAGTATCAGGATTAAGTAAGCAAAGGGATGTAAGTGAGTTGTCCGGGGAATTCACATCCCAGTGTCTGGTTTCTTCTCCTTCAAATAAAGATTTAAGGTTTTCTCCATGGCTATCTGGGAAACAATTTCACAGCTCCAAAACAAGAGCAGCAGTGGCTGAGAATGGGAGCCCTAACCATCACAGAAGCCTCTCTCTTCCATTTTCAGACTCGGGATCCGATGATTTGACCTCTTCTTCCCATGTTGAGAAACTGGTAGTGGATCTAAAAAGTCAATCTAATGAAGCACAAACTGCAGCTGCAGCAGAGCTGCGGCTTCTTGCAAAGCACAACATGGAGAACCGCATCATTATTGCCCAGTGTGGGGCTATTGCACCGTTGGTTTCGTTGCTGTATTCAGTGGTGAAGCTGACCCAAGAGCATGCTGTCACAGCCCTGTTGAACCTATCGATCAATGAAGACAACAAGGCCATGATTGCGCAAGAAGGGGCAGTAGAACCACTAATCCACGTACTTAAGTCAGGAAATGCAGGGGCCAAAGAGAACTCTGCCGCTACTCTGTTCAGCCTCTCTGTCTTGGAAGAATACAAGATTAAGATTGGCCGTTCTGGTGCAGTTAAAGCGTTGGTTGATCTTTTAGGCTCTGGGACCGTCAGAGGGAAGAAAGATGCAGCTACTGCCTTGTTCAATCTATCGATCTTTCATGAGAACAAGGCACGTATAGTGCAAGCTGGGGCAGTGAAGTGCCTCATTGAGCTGATGGACCCTGACACAGGAATGGTCGACAAGGCCGTTGCTCTCCTTGCAAACCTGTCAACAATTCCGGAGGGGCGCTCAGCGATTACTCGCGATGGCGGCATCCCGCTACTAGTCGAGGTTGTCGAAACAGGGTCTCAGAGGGGAAAAGAAAATGCTGCCTCCATCTTATTGCAACTATGCATTAATAGCCACAAGTTCTGTGGCCTGGTTTTGCAAGAAGGAGCTGTGCCACCTCTTGTTGCATTGTCTCAGTCTGGCACACCTAGAGCAAAGGAGAAGGCACAGCAGATTCTTAGTCATTTCCGGAACCAGCGAGAGGGAGCGATTGGGAAGTCGAAATCATGA 2382 0.4526 MQGLMDAKSVRCLINSISRFIHLVACQTVKTEPLQKDYRYMVCLLRLLKPVLDEVVDSKIPSDEMLVKEFEELDVVVNEAREFMEKWCPKMSKIRTVLQIEPLVIKVQISSLDICHILCRLLQSSAFTSHLASVQHCMQELQSSEQERISGLIDEALRDQRDNLTPRAEHLIKICESMGLTSNQDLLMESAALEKERAKAQLNKNKGESDLIDLIADLIAHIRDCMFKLEQFEAINGLPIPPYFRCPLSLGLMLDPVIVASGQTYEKAFIQKWLDHGLTICPKTRQILAHTNLIPNYTVKALIANWCEDNNIRVFETVNGSNISSSLSHHVSPQDFICADSFRGSLHSSNSTSRSSLEVGNGSERQRVEFSSKCGEEDSNLGCRKMTPKCDNPSPEQLHIHSRSESVSSAISSIEDVPTVFTEGPTEVSGLSKQRDVSELSGEFTSQCLVSSPSNKDLRFSPWLSGKQFHSSKTRAAVAENGSPNHHRSLSLPFSDSGSDDLTSSSHVEKLVVDLKSQSNEAQTAAAAELRLLAKHNMENRIIIAQCGAIAPLVSLLYSVVKLTQEHAVTALLNLSINEDNKAMIAQEGAVEPLIHVLKSGNAGAKENSAATLFSLSVLEEYKIKIGRSGAVKALVDLLGSGTVRGKKDAATALFNLSIFHENKARIVQAGAVKCLIELMDPDTGMVDKAVALLANLSTIPEGRSAITRDGGIPLLVEVVETGSQRGKENAASILLQLCINSHKFCGLVLQEGAVPPLVALSQSGTPRAKEKAQQILSHFRNQREGAIGKSKS* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl07g00713 793 SUPERFAMILY RING/U-box 237 316 - -
Eupl07g00713 793 SMART arm_5 660 699 IPR000225 GO:0005515
Eupl07g00713 793 SMART arm_5 537 577 IPR000225 GO:0005515
Eupl07g00713 793 SMART arm_5 700 740 IPR000225 GO:0005515
Eupl07g00713 793 SMART arm_5 578 618 IPR000225 GO:0005515
Eupl07g00713 793 SMART arm_5 619 659 IPR000225 GO:0005515
Eupl07g00713 793 SMART Ubox_2 243 306 IPR003613 GO:0004842|GO:0016567
Eupl07g00713 793 MobiDBLite consensus disorder prediction 348 370 - -
Eupl07g00713 793 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 630 672 IPR000225 GO:0005515
Eupl07g00713 793 Coils Coil 183 208 - -
Eupl07g00713 793 Gene3D - 494 788 IPR011989 -
Eupl07g00713 793 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 314 IPR013083 -
Eupl07g00713 793 SUPERFAMILY ARM repeat 501 780 IPR016024 -
Eupl07g00713 793 FunFam RING-type E3 ubiquitin transferase 492 786 - -
Eupl07g00713 793 ProSiteProfiles U-box domain profile. 239 313 IPR003613 GO:0004842|GO:0016567
Eupl07g00713 793 Pfam U-box domain 240 311 IPR003613 GO:0004842|GO:0016567
Eupl07g00713 793 CDD RING-Ubox_PUB 241 293 IPR045210 -
Eupl07g00713 793 PANTHER U BOX DOMAIN-CONTAINING 33 781 - -
Eupl07g00713 793 MobiDBLite consensus disorder prediction 474 501 - -
Eupl07g00713 793 MobiDBLite consensus disorder prediction 348 368 - -
Eupl07g00713 793 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 548 590 IPR000225 GO:0005515
Eupl07g00713 793 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 671 712 IPR000225 GO:0005515
Eupl07g00713 793 Pfam Armadillo/beta-catenin-like repeat 539 576 IPR000225 GO:0005515
Eupl07g00713 793 Pfam Armadillo/beta-catenin-like repeat 578 617 IPR000225 GO:0005515
Eupl07g00713 793 Pfam Armadillo/beta-catenin-like repeat 621 658 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl07g00713 Eupl-Chr7 21907289 21922925 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl07g00713 200 790 U-box Gene Family AT2G23140 49.002 6.80e-178 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl07g00713 - - nnu:104589991 1082.01